Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1533 ATGGAGTTCTGGGGTGTTGAAGTAAAAAGCGGAGAAACTCTCGAGGTTGATCCGGGATATGGCAAGATGATCCATCTTTCAATGGCATGCCTGGGTGAGGTTAAGAAGGATAAAGGCGAACCAGTGACTGTGTATGTGAAATTTGGTGACCAGAGGCTTGTGATTGGAACACTTACTTCTGAGAACTTTCCTCAGATTTCTTATGATTTAATATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCTGAACCTCCTTTGGAATCTGAAAATGAAGAAGACTCTGAAGAGTTCGAAGATATTCCAGTTGCTGCTGCCAATGGAAATTCTGAGCTTGAGGTAAAGAATGCTGTCAAACTTGATGCCAATGAAGCTAAACAAAAGGAGAAAATAGGGGATCCAAGAAAGAAAGAGAAAGCAAATGAAAAGGATGCAAATGGTGAAGATGAGGAAGATTCATTTGATGCTGACTCTGATGAATCTGATGAGGATTCTAGTGAAGATGAGGCCATGGCAAATGGTGAGAAAGATGGTGAAGGTGAAGATGACTCTGATGATGATGATGACAAGGACGAAGATGATGACGATGACGATGAATCTGACAAGGAGGAGACACTCAAGAAGGCTGAATTGAGCAAAAAGAGGGTTCATGAATCATCCAAGAAAACACCTGTTCCAGAGAAGAAGGCAAAATTTGTTACTCCTGAAAAGATTGACAACAAGGGTGGTGTTCATGTTGCAACTCCTTACCCAACTAAGCAGGCTATCAAGGCAGCTGCCAATAATAGGCAACTGGTGAAGCAGCAGACTCCAAAGTTAGTTGGAGACTATGGCTGCAAGGATTGCAACAGGTTGTTTAAGACAGAAGATGCCTTAAACTCCCATAACAAGGCCAAGCACAGTGCTAAGTGA 945 0.418 MEFWGVEVKSGETLEVDPGYGKMIHLSMACLGEVKKDKGEPVTVYVKFGDQRLVIGTLTSENFPQISYDLIFEKEFELSHNWKNGSVFFTGYKAEPPLESENEEDSEEFEDIPVAAANGNSELEVKNAVKLDANEAKQKEKIGDPRKKEKANEKDANGEDEEDSFDADSDESDEDSSEDEAMANGEKDGEGEDDSDDDDDKDEDDDDDDESDKEETLKKAELSKKRVHESSKKTPVPEKKAKFVTPEKIDNKGGVHVATPYPTKQAIKAAANNRQLVKQQTPKLVGDYGCKDCNRLFKTEDALNSHNKAKHSAK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1533 314 ProSitePatterns Zinc finger C2H2 type domain signature. 290 311 IPR013087 -
Amo06g1533 314 MobiDBLite consensus disorder prediction 158 212 - -
Amo06g1533 314 Gene3D Nucleoplasmin core domain 1 96 - -
Amo06g1533 314 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Amo06g1533 314 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 310 - -
Amo06g1533 314 MobiDBLite consensus disorder prediction 117 257 - -
Amo06g1533 314 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 310 - -
Amo06g1533 314 Pfam C2H2-type zinc finger 288 312 - -
Amo06g1533 314 MobiDBLite consensus disorder prediction 213 249 - -
Amo06g1533 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 314 IPR013087 -
Amo06g1533 314 MobiDBLite consensus disorder prediction 128 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1533 1 94 C2H2 Transcription Factor Family AT5G03740 54.255 4.78e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g1533 NPL 7.4e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1533 - - ccaj:109796568 362.459