Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1494 ATGGATTGGAACTTGGAAATGAATACACTTGAAGAGGGAGAGGTAATGGAGTGGAATGAAAGCACAAGATCCTTTGCTCCTCGTGCTGAGTCTTCACTAAGCTTCTTTCACAACTATAGCAGCAGTAGCAGCAACAATAACAATAGCAGCAACCCATCATATCCAAGAAGTGAAGTGAAACAAGCAGCATTGGTGGAGACACCACAAGAGTCGCTTCATGCAATGGCGGAAGTAAAGTACGCGGGCCACCGCGAGAAGAAGAAGCGGTTAACAAGCAGCCAGATTGAGTCATTGGAGAGAAGCTTTCAGGAGGAGATAAAGTTGGACAGTGACAGGAAGATAAAGCTTTCCAGGGAGCTTGGCCTCCAGCCTCGCCAAATCGCGGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACTTTGCCCTTAAACACGAATTTGATCACATCTCCAATGAGAAGCACAAGCTTCAAGAAGAGGTTATGATGTTGAAGGCAAGCCTAAGAGAGCAAGCATTTAGAGCACATGTATCTGGTGTTTACACAGAAATGTCTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCCAAGGGAATGATTCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAGCAGATTGTAGATGGCTACAGCTGCTTTCTTGTGGAGGATCATCATAACACTGTTCCACTGCCTCGATGGGCCGTTGCACCATATTGTCCCTAA 780 0.4359 MDWNLEMNTLEEGEVMEWNESTRSFAPRAESSLSFFHNYSSSSSNNNNSSNPSYPRSEVKQAALVETPQESLHAMAEVKYAGHREKKKRLTSSQIESLERSFQEEIKLDSDRKIKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYFALKHEFDHISNEKHKLQEEVMMLKASLREQAFRAHVSGVYTEMSGAETVESTSEMLHGSKGMIHNNNNNNNNNNNNNNNNQQIVDGYSCFLVEDHHNTVPLPRWAVAPYCP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1494 259 MobiDBLite consensus disorder prediction 39 57 - -
Amo06g1494 259 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Amo06g1494 259 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Amo06g1494 259 MobiDBLite consensus disorder prediction 39 58 - -
Amo06g1494 259 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Amo06g1494 259 Gene3D - 81 146 - -
Amo06g1494 259 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Amo06g1494 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 251 IPR045224 GO:0003700
Amo06g1494 259 CDD homeodomain 84 142 IPR001356 GO:0003677
Amo06g1494 259 SUPERFAMILY Homeodomain-like 71 143 IPR009057 -
Amo06g1494 259 SMART HOX_1 83 145 IPR001356 GO:0003677
Amo06g1494 259 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1494 Amo-Chr6 44081782 44083242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1494 16 174 Homeobox Transcription Factor Family AT5G03790 48.810 1.52e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo06g1494 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1494 - - adu:110272999 331.643