Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1480 ATGAAGCTGTGTCGTCGTGATTGGAAGCTCCCTCGCCGTCGTTTGGAAGCTCGTTGGCCGTCTCCTCTGTTCGAGCGCTCTCCTTCTCTCTGTGTGTTGCCGTTGTGCTTCTGCTACTGCCCTTCCTCTTCGCAGCCATGTATCTACATGCATGATTCAAGAATCATTAAATCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGTTCCACTAAGTATCATATAAATTCAAGATGGTTTCAAGTATTCAGAAGTGATCGAGATCGACGAGATCTGGTAACCTGTGGGTGTACAGCAGGAATTGCTGCTGCATTTAGAGCTCATGTTGGTGGTGTATTCTTTGCATTGGAAGAGTGGAAGAGTCAACTTATGTGGCGTGTCTTCTTCACATCTGCTATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAAGAATGGAAGAACTGTACTGAAGAAAGAAAAATGTAGTCCATGCCCGGAATCTGATCCTACTTCTGGTATTGAATGCCCACGTCCTCCTGGAATGTATAGGAATTATGTAAAATTCTTTTGTAGCAGTGACAATGAGTATAATGATCTTGCGACTATTTTCTTCAATACACGGGATGATGCCATCAGGAATTTGTTCAGTGCAAAAACAATACATGAGTACAGTTCCCAAAGTCTGTTAACCTTTTTTGTTATGTTTTATACTTTAGCAGTGTTGACATTTGGTACTACTATGCCAGCCGGTCAATTTGTCCCTAGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAAAAAGCTCAATATTGAAGAGGGAATGAGCTGCATTTTTCTTGGTTGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACAAATAACCTGAAACCTTTGCCCCTTATTATGCTTGTTCTTCTTATATTGAAGGATGTGGGTGATACTTTTAATGAGGGTCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCTATTACTAGAATCAAGGCCTAAATATGAGATACGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTGATCTTGTTACCTCGGGTAGTTAAGGTTTCAGACGTAGTGTCCATTCTACAGAGCAACAAACACAATGGTTTTCCATGCAAGATGTCTCCATATAATTACAGAAGAGGACGGAGAAAAGGTAAAGTAGTTGATGAAGTTCGTAAACTTGATGGTGCTGTGGGTGTCTTCCTCTTAGAGGGTGTTGCGGTTGTTGATCTCTCCAAATTACCCCTCGGAATGTACTTGTTGTTAGTAGGGACCCTGAACATGATGTCTCTCGGATGCTACTCTACCCTTGCTACTGTTGCTAAACGCATCACCATCGATGGAAAAGGGATGTTGATGTTCTTTTTCTCAACCAATTTCTAA 1491 0.4199 MKLCRRDWKLPRRRLEARWPSPLFERSPSLCVLPLCFCYCPSSSQPCIYMHDSRIIKSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCTAGIAAAFRAHVGGVFFALEEWKSQLMWRVFFTSAIVAVVVRTAMGWCKNGRTVLKKEKCSPCPESDPTSGIECPRPPGMYRNYVKFFCSSDNEYNDLATIFFNTRDDAIRNLFSAKTIHEYSSQSLLTFFVMFYTLAVLTFGTTMPAGQFVPSIMIGSTYGRLVGMFVVKYYKKLNIEEGMSCIFLGCSMRMTVSLCVIMVEITNNLKPLPLIMLVLLILKDVGDTFNEGLYEEQARLRGILLLESRPKYEIRNMTAKEACGSGRVILLPRVVKVSDVVSILQSNKHNGFPCKMSPYNYRRGRRKGKVVDEVRKLDGAVGVFLLEGVAVVDLSKLPLGMYLLLVGTLNMMSLGCYSTLATVAKRITIDGKGMLMFFFSTNF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1480 496 PRINTS Chloride channel signature 51 70 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo06g1480 496 PRINTS Chloride channel signature 346 360 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo06g1480 496 PRINTS Chloride channel signature 115 134 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo06g1480 496 Pfam Voltage gated chloride channel 58 160 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo06g1480 496 Pfam Voltage gated chloride channel 216 334 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo06g1480 496 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 55 164 - -
Amo06g1480 496 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 172 434 - -
Amo06g1480 496 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 55 164 - -
Amo06g1480 496 Gene3D Clc chloride channel 198 357 - -
Amo06g1480 496 Gene3D Clc chloride channel 54 182 - -
Amo06g1480 496 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 172 434 - -
Amo06g1480 496 SUPERFAMILY Clc chloride channel 56 360 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1480 Amo-Chr6 43609705 43618198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1480 173 407 Ion Channels AT5G26240 79.167 6.41e-121 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1480 K05016 - gmx:100811908 390.963