Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1419 ATGCCGATCAGAAACATCGCTATCGGAAGGCCCGAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGACTTGCTGAGTTCATCTCTACTCTTATCTTCGTCTTTGCCGGTTCAGGTTCCAGCATCGCATACAACAAGCTCACTAACGATGGCGCCGCCACACCCGCAGGCCTCATCGCCGCCGCCGTCGCCCATGCATTCGCCCTCTTCGTCGCCGTCTCCGTTGGCGCCAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACCTTCGGCGCTTTCGTCGGCGGCAACATCACCTTCCTCCGCGGCATCGTCTACATCATCGCCCAGCTCCTCGGCTCCATCGTCGCTGCCTTGCTCCTCAAGTTCGTCACCGCAAGCACTGTTCCAGCATTTGCACTCTCATCAGGAGTAGGTGTTGGTGAGGCTTTGGTGTTGGAAATTGTGATGACTTTCGGTTTGGTGTACACTGTGTACGCTACCGCTGTTGACCCCAAGAAGGGTAGTTTGGGAACTATTGCACCAATCGCAATTGGTTTCATCGTTGGTGCCAACATCCTTGTAGGTGGGGCTTTCGACGGTGCATCTATGAATCCTGCCGTTTCCTTCGGACCCGCCGTCGTGAGCTGGAGCTGGAGCAATCACTGGATCTACTGGGTGGGCCCACTCATCGGTGGTGGTATTGCCGGAGTCATCTACGAGGTTCTTTTCATCAGCCACACCCATGAGCAGCTCCCAACCACTGACTACTAG 753 0.5631 MPIRNIAIGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSSIAYNKLTNDGAATPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGIVYIIAQLLGSIVAALLLKFVTASTVPAFALSSGVGVGEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWSNHWIYWVGPLIGGGIAGVIYEVLFISHTHEQLPTTDY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1419 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Amo06g1419 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Amo06g1419 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Amo06g1419 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Amo06g1419 250 TIGRFAM MIP: MIP family channel proteins 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1419 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1419 Amo-Chr6 39394513 39397782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1419 1 250 Major Intrinsic Protein MIP AT2G36830 81.673 1.01e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1419 K09873 - gmx:100527509 438.343