Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo06g1417 | ATGGAGCAGCAGGAGGAAGAGGAACATGTGGTGCGCAGCAACAAAAATAACAATAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACTTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACGGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGCGGAGGCCGGGTAACCCGCCATAATAACAAAAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACTACAGAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACAGCTCCATGTACTGCCGCAGCACCACCACCACCAAAACAACAACCGCCATGGAAACCCCTGCTCCTATTTCCAAGACAAGTAAGGTTCATGAATGTTCCATTTGCGGTGCCGAATTCACTTCTGGCCAAGCTTTGGGTGGTCATATGAGGAGGCACAGGGGTTTGTTGACCGTTTCTTCCGCCACAGCCGCAACCACAACCACCACCACTACAACTACATCATCATCTATTAGTGGTGCTAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGACCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTATCAAAGTTCTCGTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG | 912 | 0.4605 | MEQQEEEEHVVRSNKNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRVTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTEENYNNDPTSTALTLQISNSSMYCRSTTTTKTTTAMETPAPISKTSKVHECSICGAEFTSGQALGGHMRRHRGLLTVSSATAATTTTTTTTTSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVSKFSFQSKEKVIVFSSAASLVDCHY* | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo06g1417 | 303 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
Amo06g1417 | 303 | SUPERFAMILY | beta-beta-alpha zinc fingers | 105 | 214 | IPR036236 | - | |
Amo06g1417 | 303 | PANTHER | GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE | 12 | 303 | - | - | |
Amo06g1417 | 303 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Amo06g1417 | 303 | Coils | Coil | 239 | 259 | - | - | |
Amo06g1417 | 303 | SMART | c2h2final6 | 192 | 214 | IPR013087 | - | |
Amo06g1417 | 303 | SMART | c2h2final6 | 106 | 128 | IPR013087 | - | |
Amo06g1417 | 303 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - | |
Amo06g1417 | 303 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 128 | IPR013087 | - | |
Amo06g1417 | 303 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 12 | 303 | - | - | |
Amo06g1417 | 303 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 192 | 219 | IPR013087 | - | |
Amo06g1417 | 303 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 133 | IPR013087 | - | |
Amo06g1417 | 303 | Gene3D | Classic Zinc Finger | 103 | 214 | - | - | |
Amo06g1417 | 303 | Pfam | C2H2-type zinc finger | 191 | 215 | - | - | |
Amo06g1417 | 303 | Pfam | C2H2-type zinc finger | 106 | 131 | - | - | |
Amo06g1417 | 303 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 194 | 214 | IPR013087 | - | |
Amo06g1417 | 303 | MobiDBLite | consensus disorder prediction | 228 | 254 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo06g1417 | Amo-Chr6 | 39094621 | 39095970 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo06g1417 | 18 | 303 | C2H2 Transcription Factor Family | AT5G03510 | 38.608 | 7.36e-60 | 191 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Amo06g1417 | zf-C2H2_6 | 2e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo06g1417 | - | - | adu:107494043 | 531.946 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g2005 | 16 | 60653803 | 60655060 | Amo06g1417 | 06 | 39094621 | 39095970 | hybridization |