Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1417 ATGGAGCAGCAGGAGGAAGAGGAACATGTGGTGCGCAGCAACAAAAATAACAATAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACTTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACGGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGCGGAGGCCGGGTAACCCGCCATAATAACAAAAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACTACAGAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACAGCTCCATGTACTGCCGCAGCACCACCACCACCAAAACAACAACCGCCATGGAAACCCCTGCTCCTATTTCCAAGACAAGTAAGGTTCATGAATGTTCCATTTGCGGTGCCGAATTCACTTCTGGCCAAGCTTTGGGTGGTCATATGAGGAGGCACAGGGGTTTGTTGACCGTTTCTTCCGCCACAGCCGCAACCACAACCACCACCACTACAACTACATCATCATCTATTAGTGGTGCTAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGACCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTATCAAAGTTCTCGTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG 912 0.4605 MEQQEEEEHVVRSNKNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRVTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTEENYNNDPTSTALTLQISNSSMYCRSTTTTKTTTAMETPAPISKTSKVHECSICGAEFTSGQALGGHMRRHRGLLTVSSATAATTTTTTTTTSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVSKFSFQSKEKVIVFSSAASLVDCHY* 304
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1417 303 MobiDBLite consensus disorder prediction 1 72 - -
Amo06g1417 303 SUPERFAMILY beta-beta-alpha zinc fingers 105 214 IPR036236 -
Amo06g1417 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 12 303 - -
Amo06g1417 303 MobiDBLite consensus disorder prediction 1 15 - -
Amo06g1417 303 Coils Coil 239 259 - -
Amo06g1417 303 SMART c2h2final6 192 214 IPR013087 -
Amo06g1417 303 SMART c2h2final6 106 128 IPR013087 -
Amo06g1417 303 MobiDBLite consensus disorder prediction 44 63 - -
Amo06g1417 303 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Amo06g1417 303 PANTHER ZINC FINGER PROTEIN ZAT5 12 303 - -
Amo06g1417 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Amo06g1417 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Amo06g1417 303 Gene3D Classic Zinc Finger 103 214 - -
Amo06g1417 303 Pfam C2H2-type zinc finger 191 215 - -
Amo06g1417 303 Pfam C2H2-type zinc finger 106 131 - -
Amo06g1417 303 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Amo06g1417 303 MobiDBLite consensus disorder prediction 228 254 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo06g1417 Amo-Chr6 39094621 39095970 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1417 18 303 C2H2 Transcription Factor Family AT5G03510 38.608 7.36e-60 191
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g1417 zf-C2H2_6 2e-12 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1417 - - adu:107494043 531.946
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2005 16 60653803 60655060 Amo06g1417 06 39094621 39095970 hybridization