Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1416 ATGTCTGGTGAAGAAGGTCCTGTTGTGGCAGCTGAGGCAGCAGCTCCTGCCATCGGCGAGCCAATGAATATCATGACTGCCTTACAGCTAACACTTAGGAAGTCACTTGCTTATGGTGGTCTTGCACAAGGCCTTTGTGAGGGTGCCAACGTGATTGAGAAGCGCACTGCTCAGCTCGTTGTTCTTGCTGAGGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGACCTTTGTGCTGAGCATTTGTGA 252 0.5 MSGEEGPVVAAEAAAPAIGEPMNIMTALQLTLRKSLAYGGLAQGLCEGANVIEKRTAQLVVLAEDCDQPDYVKLVKDLCAEHL* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1416 83 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo06g1416 83 PANTHER 40S RIBOSOMAL PROTEIN S12 1 82 - -
Amo06g1416 83 SUPERFAMILY L30e-like 20 82 IPR029064 -
Amo06g1416 83 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 82 IPR004038 -
Amo06g1416 83 PANTHER 40S RIBOSOMAL PROTEIN S12 1 82 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo06g1416 83 Gene3D - 9 83 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1416 Amo-Chr6 39089236 39090447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1416 18 82 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 72.308 5.10e-28 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1416 K02951 - sly:101256955 113.235