Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1393 ATGCCCCATAGAAGCTGCATTTTGCTACTGTGTATTGTTGGTTCCATGTTAGCACTTGAAGGAGCTGCAATGCTGAACCTAACTCTACCAGGACAACACCCTGACCCTGAAGCTGTTGCTAATGAAGTCCACAGGAAGGTGAATGGTTCAATGGCAAGAAGGGAAATGCTGTCGACAGTGTCTTCTTGCCTAACTGGTAACCCCATAGACGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCAGACTGCGCCATTGGGTTTGGGCAACACGCTAAGGGCGGAAAGGATGGGGAGTTCTACATTGTCACAGATTCCTCAGATGATGATGCAGTAAACCCTAAGCCAGGAACACTCAGATATGCTGTCATACAGAATGAGCCGCTGTGGATCGTGTTCCCAAGTAACATGAAGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCATCCTTCAGGGAACACAAATGTGCGTTCCCGCCCTGACCACTATGGCTACCGGACGCTGTCTGACGGGGATGGAATCTCCATCTTTGGGTCCAAAGACATATGGATAGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTCATCGACGCAGTCATGGGCTCCACTGGAATCACAATCTCCAATAACTACTTCTCCCACCACAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCAGGCATGCAGGTGACCATTGCCTTCAACCATTTCGGTCCCATGCTCGTCCAGCGCATGCCACGTTGCCGCCGGGGCTACATCCATGTGGTCAACAACGATTTCACGCGGTGGCAGATGTATGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCACCCCTGAACCCCTTTGCAAAGGAGGTGACCAAGAGGGTTGACACTGCGGAGGGGAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTGAATGGCGCGTTTTTTGTGGCCTCTGGGGAAGGAGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCAAAGTCTGCTGATAGGATTTCTCAGCTTACCATGTCCGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCTAACAGCCAGGGCCAGGGCGACGGAGTCACATGGTTGGTGCCGGAATACACAGAGGACTATTCGCAGGGCTCAAGGGTGGTGCTGCCATCTTCCTCTACTTTCACCCTTGTGTGGTCTTTCCTGCTCTTGTTCATACTGTCTTGTAACAAGATACCGTCAACAGTTATTCTATAA 1440 0.5118 MPHRSCILLLCIVGSMLALEGAAMLNLTLPGQHPDPEAVANEVHRKVNGSMARREMLSTVSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMKIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSRPDHYGYRTLSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWQMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMSAGVLGVAKDNSVGMWSKGPNSQGQGDGVTWLVPEYTEDYSQGSRVVLPSSSTFTLVWSFLLLFILSCNKIPSTVIL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1393 479 PANTHER PECTATE LYASE 18-RELATED 2 425 IPR045032 GO:0030570
Amo06g1393 479 Gene3D - 66 408 IPR012334 -
Amo06g1393 479 SUPERFAMILY Pectin lyase-like 59 396 IPR011050 -
Amo06g1393 479 Pfam Pectate lyase 150 326 IPR002022 -
Amo06g1393 479 SMART amb_all 141 338 IPR002022 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Amo06g1393 479 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Amo06g1393 479 PANTHER PECTATE LYASE 12-RELATED 2 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1393 Amo-Chr6 36356600 36358387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1393 1 419 Polysaccharide Lyase AT3G53190 77.336 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1393 K01728 - gmx:100775595 775.393