Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1381 ATGGGCTCTGGAATTGTTTGCAGATGCTGCGACTCTGAGGTCAGCCCTTCACAGTTTGAGGCCCATGCAGGTTGCGCTTCTCGCAAGAAACCTTATGCTTACATTTATACATCAAATGGTGTATCTCTCCATGAGTTAGCAATATCTCTCTCCAAAGATCGAAAATATTCGGCAACAGATAACGATGATCTATGCATTGTTTGTTGGGATGGTGGAAATTTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGCGGTGACTGGTATTGTGAATTTTGCCAAAACATGTTTCAGAGAGAGAAGTTTGTGGCGTACAATTCCAATGCTGTTGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATCCAAGAGATAACAAACAGATGCATACGCATAGTCAAAGATGTTGAAGCTGACCTTGGTGCATGTGCTTTATGCAGAGGTGTTGACTTCAGCAGATCCGGCTTTGGCCCACGCACCATTATACTATGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGAACATAAGATGGCATATTTGAAGGAATTGCCAGTGGGGAAGTGGCTTTGTTGTAATGATTGTACAAGAATACATTCTACTTTGGAGAACCTTCTGGCCATGGGTGCTGAGAGACTCCCTGAATCTCTACTGGGCATTATAAAGAAAAAGCAAGAGGAGAAAGGACTGGAACCCCTCAATGATATTGACATAAGATGGAAGCTTCTTAATGGCAAAATTGCTTCTCGTGAAACCAGGCCATTGCTTTTGGAGGCTGTTTCAATCTTCCACGAATGTTTCAGTCCCATAGTTGATGCAATTAGTGGACGGGACTTTATTCCAGCCATGGTTTATGGAAGGAATGTTCGGGGGCAGGAGTTTGGAGGAATGTATTGTGCAGTATTAACGGTCAATTCATATGTGGTATCTGTGGGCATGCTTCGAATTTTTGGCAAAGATATTGCCGAACTCCCCTTGGTTGCAACCACTAACAAGGACCACGGAAAGGGTTACTTCCAAACACTCTTCTCTTGCATTGAGAGGCTGCTTTCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCAGAATCGATATGGACAAATAAATTTGGATTTAGCAAGATGATACCAGACCAGCTTATCAGCTACAGAAAGAATTGCCATCAGATGGTGACATTCAAAGGTACAAATATGCTTCATAAAACGGTGCCTCCCTGTCGGATCATCCCCAATCAACCATGGCAATCTGATATTTAA 1308 0.4297 MGSGIVCRCCDSEVSPSQFEAHAGCASRKKPYAYIYTSNGVSLHELAISLSKDRKYSATDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCEFCQNMFQREKFVAYNSNAVAAGRVEGVDPIQEITNRCIRIVKDVEADLGACALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLREHKMAYLKELPVGKWLCCNDCTRIHSTLENLLAMGAERLPESLLGIIKKKQEEKGLEPLNDIDIRWKLLNGKIASRETRPLLLEAVSIFHECFSPIVDAISGRDFIPAMVYGRNVRGQEFGGMYCAVLTVNSYVVSVGMLRIFGKDIAELPLVATTNKDHGKGYFQTLFSCIERLLSFLNVKNLVLPAAEEAESIWTNKFGFSKMIPDQLISYRKNCHQMVTFKGTNMLHKTVPPCRIIPNQPWQSDI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1381 435 Pfam PHD-finger 65 106 IPR019787 -
Amo06g1381 435 SUPERFAMILY FYVE/PHD zinc finger 50 110 IPR011011 -
Amo06g1381 435 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 426 - -
Amo06g1381 435 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 303 390 IPR016181 -
Amo06g1381 435 ProSiteProfiles Zinc finger PHD-type profile. 62 107 IPR019787 -
Amo06g1381 435 SMART PHD_3 152 209 IPR001965 -
Amo06g1381 435 SMART PHD_3 64 105 IPR001965 -
Amo06g1381 435 SUPERFAMILY FYVE/PHD zinc finger 143 206 IPR011011 -
Amo06g1381 435 PANTHER AUTOIMMUNE REGULATOR 1 426 - -
Amo06g1381 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 211 IPR013083 -
Amo06g1381 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 147 IPR013083 -
Amo06g1381 435 ProSitePatterns Zinc finger PHD-type signature. 65 104 IPR019786 -
Amo06g1381 435 Pfam Tify domain binding domain 2 48 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1381 Amo-Chr6 35395830 35401104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1381 1 426 PHD Transcription Factor Family AT2G36720 61.737 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo06g1381 TDBD 6.2e-17 No_clan