Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1358 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTGCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCTCATAGCAGCTTCGGAGACGACGAAGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCGAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTTGCTTGAAGCCAAATGTGCTGCGCTGGAAAGTAAGGGTGCTGATTGGCGTGTGAAAGAGGCTATATGGCGGAAAAGAGAAGCTGCATACCGTCTGGAAATCCAGAAGCTTAAAGCGCTACTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAACATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGGTATGACTGCATTACTAATTGGTTGTCTGACGTGGTAAAAATGTGGTCATTGATGTGGTTCATGCTAATAACAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGTAATTACTTGTAG 1236 0.4434 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEEEDDNEEDEDSSPRALPVAPSTTSNPQPIVITVESQSHSSFGDDEVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASRVVTVDDESQKKIRLLEAKCAALESKGADWRVKEAIWRKREAAYRLEIQKLKALLLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKTFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLRYDCITNWLSDVVKMWSLMWFMLITVCRARILLSTMIYSNYL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1358 411 SMART ring_2 128 173 IPR001841 -
Amo06g1358 411 Coils Coil 194 214 - -
Amo06g1358 411 Pfam Ring finger domain 128 174 IPR001841 -
Amo06g1358 411 MobiDBLite consensus disorder prediction 1 116 - -
Amo06g1358 411 CDD mRING-C3HGC3_RFWD3 124 174 - -
Amo06g1358 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 26 373 - -
Amo06g1358 411 MobiDBLite consensus disorder prediction 88 102 - -
Amo06g1358 411 SUPERFAMILY RING/U-box 118 180 - -
Amo06g1358 411 MobiDBLite consensus disorder prediction 22 55 - -
Amo06g1358 411 Coils Coil 23 56 - -
Amo06g1358 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 235 IPR013083 -
Amo06g1358 411 MobiDBLite consensus disorder prediction 61 87 - -
Amo06g1358 411 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
Amo06g1358 411 PANTHER RFWD3 PROTEIN 26 373 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1358 Amo-Chr6 33947068 33951989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1358 72 186 C3H Transcription Factor Family AT5G48655 26.984 5.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1358 K15691 - lja:Lj1g3v4614460.1 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1938 16 53098661 53103134 Amo06g1358 06 33947068 33951989 hybridization