Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1326 ATGAGAAAACCAGAGGCATTTCAGAGGCAGCAAGCCCCAAATCCAGTGTCTGTAACTGCTCTGCCACAACAACCACCGGGGATACGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCTACCGATCCTCACAGTATTGCTGAGAGGTTACGTCGTGAGAGGATTGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAAGTTAAGGTATTGAGCATGAGTAGACTAGGTGGGGCTGGCGCTGTTGCCCAGCTTGTGGCTGATGTTCCTCTATCTGCTGTCGAGCAGGGTGAGGAAATAGAAGGTGGAGGGAACAACGAGCAAGCATGGGAGAAATGGTCAAATGATGGAACAGAGCAACAAGTTGCAAAGTTAATGGAAGAAGATGTTGGAGCTGCCATGCAATTCCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCAGCCATTTTCCGTATGCCTCCTTCAGAACCATCATCACTCATCAAGCCTGAATCTAACTCCCATTCATAG 591 0.4805 MRKPEAFQRQQAPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEEIEGGGNNEQAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPSEPSSLIKPESNSHS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1326 196 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 183 - -
Amo06g1326 196 Gene3D - 33 95 IPR036638 GO:0046983
Amo06g1326 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 97 IPR036638 GO:0046983
Amo06g1326 196 Pfam Helix-loop-helix DNA-binding domain 43 87 IPR011598 GO:0046983
Amo06g1326 196 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 6 183 - -
Amo06g1326 196 SMART finulus 44 93 IPR011598 GO:0046983
Amo06g1326 196 MobiDBLite consensus disorder prediction 1 43 - -
Amo06g1326 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1326 Amo-Chr6 31065894 31067986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1326 22 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.907 4.85e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g1326 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1326 - - vun:114189791 298.516