Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1293 ATGCTTTCTCTCAGGGAGTTTTGTATTGCACTGTACCTAATAGAACGACACAGCGAAGGACGTGCTCTTCCAGGAGTACTTCCAAGTAACATTCTCCTTGCTTTACTACCTTCTGGCCTACCTGCCACTCAGTACAGTTTTGTAACTTGGGGAAATCCATCAGGTTTTCAACAAGAGGAAGGAATGAGTGACCCTGGTGCTCAACGAGTGAACCTAACTACAGGCCGGCCACCAAGGCCACAAAAGTCCCAAGTTCCAGTGTTGGAGAAGCACATCATTAATCAGTTGAGTTCAGATGAGAAAATTTCAATTAATTCGAAGTTTCAAGAAACATCAGAAGCTGATAAGAAGACTCATGTTGATTGTATCCAATCAGACCTTGATGAACTGGTAAAACCTCTAAACAACCGGTGTAAGAATGAAGAAAGTCCTGTTGTGGCAACTGAGCCAGCAGCTCCTGCCATTGGCGAGCAAATGGATATCATGAATGCCTTACAGCTAACACTTAGGAAGTCACTTGCTTATGGTGGTCTTGCACGAGGCCTTTATGAGGGTGCCAAGGTGATCGAGAAGCGCACTGCTCAGCTCGTTGTTCTTGCCGAGGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGTGCTGAGCATTTGTGA 663 0.454 MLSLREFCIALYLIERHSEGRALPGVLPSNILLALLPSGLPATQYSFVTWGNPSGFQQEEGMSDPGAQRVNLTTGRPPRPQKSQVPVLEKHIINQLSSDEKISINSKFQETSEADKKTHVDCIQSDLDELVKPLNNRCKNEESPVVATEPAAPAIGEQMDIMNALQLTLRKSLAYGGLARGLYEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1293 220 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 164 219 IPR004038 -
Amo06g1293 220 MobiDBLite consensus disorder prediction 56 84 - -
Amo06g1293 220 PANTHER 40S RIBOSOMAL PROTEIN S12 140 219 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo06g1293 220 ProSitePatterns Ribosomal protein S12e signature. 164 182 IPR000530 GO:0003735|GO:0005840|GO:0006412
Amo06g1293 220 SUPERFAMILY L30e-like 156 219 IPR029064 -
Amo06g1293 220 Gene3D - 144 220 IPR029064 -
Amo06g1293 220 PANTHER 40S RIBOSOMAL PROTEIN S12 140 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1293 Amo-Chr6 28032883 28033948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1293 155 219 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.923 1.34e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1293 K02951 K12472 adu:107479238 233.032