Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1292 ATGGATGATTCAACCTCAGATTATCAGCTGAATCAGGGCAAAGTGGATTTTGAATTTGAATCGAACGAAGTTCCTGAGCCCCTCTCTATTGTTGATGACCAGCTTGTTCCCAAGGTTGGAATGACTTTTAAAACCCTTGAAGATGCTGCAAAATTTTACAAGGACTATGCCAAGGCTGCAGATTTTTCTACAAGAGTTCAGAGTACAAATAAAAAGGGAAACAAAATTAAGAATCAATTGATTACATGTAGCAGAGAGAGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCCACAGCTGGATTAAATTGTCTTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCGAAGGTCGTGTTGCATCATTCACACCCTTGCTGTCCAACTCAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTACTTTCGTCGTACAATAGAGAATAACGAGGAAGCCGACCGTCATATATGGGTTCTAATCTATCTGGATCACCAGTTCTGGGCAGGGATGAAAAGTACACAAAGGAGCTGCATTCATTTTTAA 576 0.3993 MDDSTSDYQLNQGKVDFEFESNEVPEPLSIVDDQLVPKVGMTFKTLEDAAKFYKDYAKAADFSTRVQSTNKKGNKIKNQLITCSRERKWKSKISPTEKTNPTAGLNCLARIYIHTLKDVGAWIISKVVLHHSHPCCPTQAEMLKQHRELSMYFRRTIENNEEADRHIWVLIYLDHQFWAGMKSTQRSCIHF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1292 191 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo06g1292 191 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo06g1292 191 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1292 Amo-Chr6 28016742 28018660 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g1292 FAR1 4.8e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1292 - - adu:110280446 283.493