Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1231 ATGGATTTAGGTTCAGAAAGTTGTTCCTTTAAAAATCCAGGACAGATGGTGGAACAACAAGTTTCAAGTTCTGTTCAGACATACAAGGTTAGCTCTTTGGATAGCAAGAAGTCTTTAAAGTCTAGTTTTCTTTCTTTCATTGGAGCACATGAGATTTTCATGCCAGAGACATGGAAAACAGCATTGACTGAGTTAGTTGCAACTGCTTCTCTAATGTTCACACTGACAACCTCAATCATAGCATGTTTGGACTCGCACGAAGTTGCTGCAAAGCTTCTAGTCCCTCTTGCAGTGTTCATCATAGCCTTCTTGTTCCTAATAGTCACAATTCCACTCTCTGGAGGTCACATGAGTCCTGTTTTCACATTCATAGCAGCATTAAAGGGTGTTGTTACTCTAGTACGTGCACTAATTTATGTCATAGCACAATGCATTGGTTCAATTATTGGTTTCATTATGCTAAAATGTGTCATGGATCCAAAATTGGAACACAAATATTCATTAGGAGGATGTACAATTAGTAATGATAGTGATAAAGGACTAGGATCAAAGCCACAAGTTGCATTGTTAGTAGAATTTTCATGCACATTTTTGGTGCTATTTATTGGTATTACTTTGGGATTTGATAAGAAAAGGTCAAAGGAATTAGGATTACCTATGGTGTGTGTTGTGATTGCTGGGGCAATGGCATTGGCAGTGTTTGTGTCTATAACTGTTACTGGGCAATTGGGCTACGCAGGTGTTGGACTTAACCCAGCAAGATGTTTGGGTCCAGCTTTGTTAAAAGGTGGATTATTGTGGAATGGACATTGGGTTTTTTGGGTGGGGCCTTTCCTGGCCTGTATAACGTATTATGGGGTATCTATTAATCTGCCAAAGGAGAGTATGACTTTGGAAAATGGAGAATATGATGTGTCGAATTTGGCTTTGGGCCATAGTAAGAGTGTTTCTAGGAGTGCTGTCTCAAATGATCTTCAAGTTTGA 984 0.3923 MDLGSESCSFKNPGQMVEQQVSSSVQTYKVSSLDSKKSLKSSFLSFIGAHEIFMPETWKTALTELVATASLMFTLTTSIIACLDSHEVAAKLLVPLAVFIIAFLFLIVTIPLSGGHMSPVFTFIAALKGVVTLVRALIYVIAQCIGSIIGFIMLKCVMDPKLEHKYSLGGCTISNDSDKGLGSKPQVALLVEFSCTFLVLFIGITLGFDKKRSKELGLPMVCVVIAGAMALAVFVSITVTGQLGYAGVGLNPARCLGPALLKGGLLWNGHWVFWVGPFLACITYYGVSINLPKESMTLENGEYDVSNLALGHSKSVSRSAVSNDLQV* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1231 327 Pfam Major intrinsic protein 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 SUPERFAMILY Aquaporin-like 50 283 IPR023271 -
Amo06g1231 327 PANTHER AQUAPORIN-LIKE 28 319 - -
Amo06g1231 327 PRINTS Major intrinsic protein family signature 232 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 PRINTS Major intrinsic protein family signature 98 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 PRINTS Major intrinsic protein family signature 271 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 PRINTS Major intrinsic protein family signature 135 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1231 327 Gene3D Glycerol uptake facilitator protein. 16 298 IPR023271 -
Amo06g1231 327 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 28 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1231 Amo-Chr6 24414337 24418748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1231 58 281 Major Intrinsic Protein MIP AT3G61430 27.948 1.22e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1231 K09866 - gmx:100804160 440.269