Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1221 ATGATGTTCATATCTCGATTAGGAAGAGCTACTGTGTACCCATTTGCATCTGCAACCCAAAAATGCCACCTTTTTCTTTTCCAACACTCACACTTGATCTCAACCACTTCCCAATCAGTATCGTGCCTCACAGATAAGTGTGGATTCTCCCAAGAATCTGCTCTCAAATTATTCAGCAAGGTTCATTTCAATTCCATCAGACCCAGCAAGGCCGATTCAATCATCGCATTTTTCAGAACCCACGGTTTCTCAGATGCCCAAATCACCAAAATAACAACTAGGGTACCGGCTCTCCTACGCTGTAACCCTAACAAAAGGATTTTACCAAAGCTACAATTTTTAGCCTCCAAAGGTGCTTCTAACTCTGACATTCTCCGAATTGTAACTGGCTACCCTGAATTACTGCTTCTTGGCCTCAAGAACCGTATAGTTCCTGCTTTTGATTTGATTAGGAGGTTCTTACCCTCTGATAAAAAAACCATGAATTGTGTAATTTCATCCCCTGCATGCATTAGTCACTTCTATGTAAGCAAGAATGTGAAATTGCTTCTTGATGAGGGCTTAACTCATTCCCACATTAAGCGCTTGCTTCAATGCAGGCCTTCAATATTATCCACTTCTACTTTGTGGAAAACTGTGGCAGAAGTGAAGAAATTAGGGATTGATCCTTCTTTGATGAATTTCAGTGTGGCATTGATGGCRAAGAAGGCTGTGGCGAAATCCGGGTGGGATGCCAAAGTTGAAGCCTGTAAGACTTGGGGRTGGTCGGAGGAACAYTTTTCCGATGTGTTTAGGAAGCATGCGCAGTTTATGCTTCGGTCCGAGAAGAAAATCATAGCAGTCATGAGCTTTTGGGTTGGTAAGCTTGGTTGGGATCCTTCGGTGCTGTGCGTGGCGCCGGTAATCTTTGGATTGAGCTTGGAAGAAAGGATTATCCCAAGGGCATTGGTTGTGCAGTATCTTCTCTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAGCCACACCATTTTATCTGACTGACAAGAAGTTCCTGGAAAGATATGTGACACGTTTTGAGAAGCATCATTCATCTCAGCTATTAAAGATATTACATAGCAAAACATGTTAG 1110 0.4252 MMFISRLGRATVYPFASATQKCHLFLFQHSHLISTTSQSVSCLTDKCGFSQESALKLFSKVHFNSIRPSKADSIIAFFRTHGFSDAQITKITTRVPALLRCNPNKRILPKLQFLASKGASNSDILRIVTGYPELLLLGLKNRIVPAFDLIRRFLPSDKKTMNCVISSPACISHFYVSKNVKLLLDEGLTHSHIKRLLQCRPSILSTSTLWKTVAEVKKLGIDPSLMNFSVALMAKKAVAKSGWDAKVEACKTWGWSEEHFSDVFRKHAQFMLRSEKKIIAVMSFWVGKLGWDPSVLCVAPVIFGLSLEERIIPRALVVQYLLSKGLMKKDASLATPFYLTDKKFLERYVTRFEKHHSSQLLKILHSKTC* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1221 369 Gene3D Transcription termination factor 3, mitochondrial 172 357 IPR038538 -
Amo06g1221 369 PANTHER CGI-12 PROTEIN-RELATED 29 367 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 SMART mt_12 194 222 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 367 - -
Amo06g1221 369 Pfam mTERF 177 345 IPR003690 GO:0003690|GO:0006355
Amo06g1221 369 Pfam mTERF 76 279 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1221 Amo-Chr6 23998066 23999670 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo06g1221 mTERF 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1221 K15032 - gmx:102666622 321.242