Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1217 ATGTGTGATTGGTTTGTTGTGAAGGGGGGGCTCCGGGATGGGACATTGGTGGCAGTGAAAGTGCTTTCCATAGAGATGGAGTCCATGCGAGGAGAGAGGGAGTTTGTGGCTGAATTGGCTACGCTTGCAAATATCAAGCACCAAAATTTGGTCATTCTTAGAGGGTGCTGTGTAGAAGGAGCAAAAAGATATCTAGTCTATGATTACATGGAGAACAACAACCTTCACCACACTTTCTTAGGTTCGGAGGAAAGTAGGATGAGATTCAATTGGGAAGCAAGGAAGGAAGTGTCCATAGGTGTGGCCTCTGTTCTTGCGTTTCTTCATGAGGAACTTAAGCCTCATATTCTGCATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCGAAGGTCTCGGATTTTGGTCTCGCAAAGCTACTAAGAGATGACAAGTCTTATATCAGCACTCGAGTTGCTGGGACATTGGGCTATCTTGCTCCAGAGTATGCTAGTTCCGGACAAGTGTCGCGAAAATCAGATGTTTACAGCTTTGGAGTGCTACTCTTAGAAATTATTAGTGGAAGACCGGTGGTTGGTGCTTATGAAGACAGGGAACGTTTCATAGTAGAGAAGGCTTGGGCAGCATATGGAGAGAATGATCTATTAAAAATGGTTGATCCAGTGCTAGATATGAACTATCCTGGGGAGGAGGCGAAACGATTCCTCATGGTGGGTTTGCTTTGCGTTCAAGAAACTGCAAAGATTAGACCGCGGATGCCAGAGGTTGTAGACATGTTGAAGAACAAAAAGGACATGGAATGTGTACAGATTTCGAAACCAGGTTTTGTTGAGGATCTAAGGAACATTAGAATCAGGCAGGAAGTAATGCACTCATCGGAAGAATCAAGTTCTGGTGGAGCAACATTTGCAAGTAGTTCATCATTGACTACTTCTACTCTTGCCCGTTAA 963 0.4403 MCDWFVVKGGLRDGTLVAVKVLSIEMESMRGEREFVAELATLANIKHQNLVILRGCCVEGAKRYLVYDYMENNNLHHTFLGSEESRMRFNWEARKEVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDDKSYISTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIISGRPVVGAYEDRERFIVEKAWAAYGENDLLKMVDPVLDMNYPGEEAKRFLMVGLLCVQETAKIRPRMPEVVDMLKNKKDMECVQISKPGFVEDLRNIRIRQEVMHSSEESSSGGATFASSSSLTTSTLAR* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1217 320 PANTHER RECEPTOR-LIKE KINASE 6 312 - -
Amo06g1217 320 Gene3D Transferase(Phosphotransferase) domain 1 71 278 - -
Amo06g1217 320 SMART serkin_6 6 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g1217 320 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 312 - -
Amo06g1217 320 Gene3D Phosphorylase Kinase; domain 1 5 70 - -
Amo06g1217 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Amo06g1217 320 MobiDBLite consensus disorder prediction 296 320 - -
Amo06g1217 320 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Amo06g1217 320 MobiDBLite consensus disorder prediction 295 320 - -
Amo06g1217 320 Pfam Protein tyrosine and serine/threonine kinase 13 264 IPR001245 GO:0004672|GO:0006468
Amo06g1217 320 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1217 Amo-Chr6 23868661 23871541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1217 6 313 Receptor kinase-like Gene Family AT1G07650 45.110 5.77e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo06g1217 PK_Tyr_Ser-Thr 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1217 - - gmx:100813945 452.21