Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1216 ATGGGCAACGCATCGAGTAGCGGCGGCACCACCCGTCGGCGACATGTTGTTTCTAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGACGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCCGGAGGCAACCCGTACCCGGCTCAGTACCCGAACCAGAACCGTCCGATGCAATACCCGCAGTACCCTTACCCCGCTTACTACCATCCGCCGCCGACGGTGCCCTTCCCCCACCACAACCAGCACCAGCACCAGCCTCAAATGGGGGTCGGGTGGGTTGGCGGCCGAGGTTACCCTTGCGGGACCATGGTGGCTCCTCCAGCACCTATCGTGGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTAAATGTCAAGAAGGAAACATTGAAGATCGAGCCCGATGAGGAGAACCCTGGCCAATTCCTCGTCTCTTTCACGTTTGACGCCACGGTTTCTGGCTGCATCACAATTTATTTCTTTGCAAAAGAAAATGAAAGCTGCATTCTAACACCAGTGAAAGAAAACCTTCTCGCACCCGTGACGGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTCAGGCAGCCTGCTGGAAGTGGTATTGATTTTAAAATGTTTAATGAGACAGAATTATTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGTAGTAAAGGCAGATGCATCTCCTAGTAATACCAATGGATCAGATGAAACTACAACATCTAATACCAGAAACTCGCAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTAAAAGTTGTCAAGCAGATTTTGTGGGCGAATGGAATGAGGTATGAGTTGCAGGAGATATACGGTATTGGAAGTTCAACAGAGACTGGTGCAGATGAGAGTGACCAGGGGAAAGAATGTGTCATCTGTTTGACAGAGCCTCGCGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAATGGATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGACCTGAGGAATGA 1077 0.5051 MGNASSSGGTTRRRHVVSRRTHPPPPPPVTPQPEITSNPFLYPGGNPYPAQYPNQNRPMQYPQYPYPAYYHPPPTVPFPHHNQHQHQPQMGVGWVGGRGYPCGTMVAPPAPIVEHQKAVTIRNDVNVKKETLKIEPDEENPGQFLVSFTFDATVSGCITIYFFAKENESCILTPVKENLLAPVTVNFQQGLGQKFRQPAGSGIDFKMFNETELLQVGEMDVYPLVVKADASPSNTNGSDETTTSNTRNSQITQAVFEKEKGEFRVKVVKQILWANGMRYELQEIYGIGSSTETGADESDQGKECVICLTEPRDTIVHPCRHMCMCNGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1216 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 353 IPR013083 -
Amo06g1216 358 MobiDBLite consensus disorder prediction 230 249 - -
Amo06g1216 358 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Amo06g1216 358 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Amo06g1216 358 MobiDBLite consensus disorder prediction 1 48 - -
Amo06g1216 358 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Amo06g1216 358 SUPERFAMILY RING/U-box 303 348 - -
Amo06g1216 358 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Amo06g1216 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1216 Amo-Chr6 23761092 23763970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1216 100 323 C3H Transcription Factor Family AT3G09770 61.304 2.53e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1216 - - aprc:113862864 488.034