Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1209 ATGGCATTGTGTAACAAACTTGGAAATTTCTTGAGACAAAGTGCTTCAGGAAGCAGATTAGCATCTGCTCCATCAATGCTCAATTATATTCGCTGCATGTCCTCAAACAGGCTTTTCATTGGGGGCCTTTCATATGGAGTTGATGACCAGTCTCTTCGGGATGCATTCTCTGGCTTTGGGGATGTGGTTGATGGTGAGTTCACCTTCTCCTGTGCAAGGGTGGTCACTGATAGAGACACCGGACGATCAAGAGGTTTCGGATTTGTCAACTTCTCAAGTGATGAGTCTGCAAGCTCAGCACTCACTGCAATGGATGGGCAGGATCTAAATGGTCGAGTGATCAGGGTGAGCTATGCAAATGATAGGCCTTCTGGACCTCGAGGTGGTGGCGGAGGTTTTGGTGGTGGTGGTGGTTACGGGGAAGGTGGTTACCGTAGAGGTGGAGGTGGTGGTTATGGTGATCCAGCCTTCTAG 474 0.4916 MALCNKLGNFLRQSASGSRLASAPSMLNYIRCMSSNRLFIGGLSYGVDDQSLRDAFSGFGDVVDGEFTFSCARVVTDRDTGRSRGFGFVNFSSDESASSALTAMDGQDLNGRVIRVSYANDRPSGPRGGGGGFGGGGGYGEGGYRRGGGGGYGDPAF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1209 157 SMART rrm1_1 37 117 IPR000504 GO:0003723
Amo06g1209 157 Gene3D - 31 155 IPR012677 -
Amo06g1209 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 153 - -
Amo06g1209 157 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 153 - -
Amo06g1209 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 115 IPR000504 GO:0003723
Amo06g1209 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 121 IPR000504 GO:0003723
Amo06g1209 157 SUPERFAMILY RNA-binding domain, RBD 31 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1209 Amo-Chr6 23610425 23611448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1209 38 133 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 3.67e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1209 - - gmx:100499841 187.578