Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1204 ATGGGAAGAGCTCCATGCTGTGACAAGGCTAATGTAAAGAGAGGGCCATGGTCTCCTGAAGAAGATGAGAAGCTGAAGAACTACATAGACAAATATGGCACTGGTGGTAATTGGATTGCTCTTCCACAAAAAGTTGGCTTGAAAAGATGTGGAAAGAGCTGTAGACTTAGATGGCTTAATTATCTGAGGCCTAACATTAAGCATGGTCAGTTCTCTGAAGCAGAAGATAGAGTAATCTGCAACCTCTTTGCTACCATTGGAAGCAGGTGGTCAATAATAGCATCTCAATTACCAGGGAGAACTGACAATGATATCAAGAATTATTGGAACACCAAGCTTAAGAAGAAAATGATGATGGCCGTCCATGATAATAGTAATAATAATAATATACTATCTTCTTCAATTCTTCAAAGGAAGCCTCCTACTCCCCCTCATCATGAACAAGTTACCCTTTTATCCATGTTGCAAAATAATCCAACATCATCATCATTCATCAGCCATCATGGTCCTGCTGATGGATCATCCTATTCTTCATACTCATCAAGCCTTCTGAGTAGTGGTGGAAATAACTCTTCTACTTCCAATTCCAATTCCAATTTTCAAGGGCAAGAAAGTAATTTGATGGGACATAGCATGTTTGTGTTTGGGGGTGAAGCTACTACTAATAGCTGCAGTTCTTCTGATGCTAGCTGCAGCAACAACAACAACAACAATCATGTGATAGAGCATGATCATCATCACCATGGAACTTTTGTTGATCTCTACAATAACAATAATAATGGTGGAATATTATGGGGAGAAAATCCATTGGTGGAGGATTATGGCATAGTAGAAGAAATCAAAGAGCTAACAGCCACTACTACTATTACTACATCTACTGCTAATTGTAATAATAACTTTTTGTTTGCTGAAAAGAAGACAGACGAAAGGGTCATGTACTACTATTGA 948 0.385 MGRAPCCDKANVKRGPWSPEEDEKLKNYIDKYGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSEAEDRVICNLFATIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMMAVHDNSNNNNILSSSILQRKPPTPPHHEQVTLLSMLQNNPTSSSFISHHGPADGSSYSSYSSSLLSSGGNNSSTSNSNSNFQGQESNLMGHSMFVFGGEATTNSCSSSDASCSNNNNNNHVIEHDHHHHGTFVDLYNNNNNGGILWGENPLVEDYGIVEEIKELTATTTITTSTANCNNNFLFAEKKTDERVMYYY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1204 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo06g1204 315 CDD SANT 71 113 IPR001005 -
Amo06g1204 315 PANTHER OS09G0431300 PROTEIN 1 292 - -
Amo06g1204 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Amo06g1204 315 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo06g1204 315 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo06g1204 315 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo06g1204 315 CDD SANT 16 62 IPR001005 -
Amo06g1204 315 PANTHER OS09G0431300 PROTEIN 1 292 - -
Amo06g1204 315 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo06g1204 315 MobiDBLite consensus disorder prediction 176 203 - -
Amo06g1204 315 SMART sant 13 64 IPR001005 -
Amo06g1204 315 SMART sant 67 115 IPR001005 -
Amo06g1204 315 Gene3D - 7 68 - -
Amo06g1204 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Amo06g1204 315 Gene3D - 69 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1204 Amo-Chr6 23215746 23217331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1204 1 118 MYB Transcription Factor Family AT5G57620 87.288 1.49e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g1204 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1204 K09422 - gmx:100301876 303.908