Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1180 GAGCAAGCTTCGTGGTTTGAGATCCGCACGCCTTCTCCAGAGGCCTTCTTCCAAGATACTTCAAGCATAACTGCATTAGTGCATAACAACATCTCCAGCTTCGTAAGGCAGCTCAACACTTACGGTTTTAGAAAGATTGATCCAGATAAATGGGAGTTTGCGAACGAAGGGTTTTATAAGGAGAAGGAAGGCGCCTCCGCCACCAATCCAAACACAGATGTCGCAGAGATCGACCGGTTGAGGCGTGACAAGCAGGTTTTGATGATGGAGCTTGTGAGGCTAAGACAGCAGCAACAAACCACAAGATCGTATCTTCAGGCAATGGAGCAGAGGCTGAAAGGTACTGAGATCAAGCAGTAG 360 0.4806 EQASWFEIRTPSPEAFFQDTSSITALVHNNISSFVRQLNTYGFRKIDPDKWEFANEGFYKEKEGASATNPNTDVAEIDRLRRDKQVLMMELVRLRQQQQTTRSYLQAMEQRLKGTEIKQ* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1180 119 Pfam HSF-type DNA-binding 24 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g1180 119 SMART hsfneu3 2 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g1180 119 Coils Coil 77 97 - -
Amo06g1180 119 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 28 61 - -
Amo06g1180 119 SUPERFAMILY "Winged helix" DNA-binding domain 25 62 IPR036390 -
Amo06g1180 119 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 75 119 IPR027725 -
Amo06g1180 119 Gene3D - 8 69 IPR036388 -
Amo06g1180 119 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 61 IPR027725 -
Amo06g1180 119 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 75 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1180 Amo-Chr6 21843566 21844212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1180 13 119 HSF AT3G22830 47.183 1.62e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo06g1180 HSF_DNA-bind 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1180 K09419 - csv:101208010 119.398