Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1164 ATGGATATTGATGAAGCTGAGAGAGTAGTCGTGGCAAAACCAGTTGCTTCAAGGCCTAATTGTTCTACTTTCAGATCTTTCTCTGAGCTTCTTGCAGGTGCCATTAATGCCTCATCACCTCAAATTGAATCTTCCCAGGCAACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCGGCACTGAACCGCACCCCCGCTGCGTCTGTTGCTTCTCAGGATGACATTTTTGAAGCTGCACTTTGTGATTCTTCCCACAAGAGTCCTAATTCTGACACCAAGCAGTCTCTCATATACAAACCAATGGCAAAACTTGTGTCAAGGACAACAGTTTCTCTTTTGGCAAATATGGGAAATTGCCGTACAATTCAGCAACAATCCGGGCAATCAATGGAGGGTGGTCTTCATCATATCAGCCATGAAAGTTTCGGAACTAATCTGAGCTCTGATCTTTATCACAGTCACAGCATTACACCACCTTCTGAAACTACTGAACCTTGTAAGATGATGCAACAGAACATAGAGGAGGATCAGAAGGCTTTAACATCCGCAATCAATTGCGATCGACCTTCTTATGATGGGTATAACTGGAGGAAATACGGGCAGAAGCAAGTGAAAGGAAGTGAGTATCCGCGGAGTTATTATAAGTGCACTCATCCTAATTGTCCAGTGAAGAAGAAGGTTGAGAGATCATTTGATGGACAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATCCAAAGCCACAGCCTCCCAAGCGCAGCGGAACAGCAGGGATGCAAGGATCAGGAATGGTGCCTGATGGAGTGCCTCAAGATGTGTGGAGTAACAATCACAGTGAGAGGAATGATAGCAGAATAGAAAACCAGAATGACACAGGGCTGCCTGCGAATTCGGTTTATGGGGTTAAAGTTTCGCAGCCTAATGATTCTATTTTAAATGCATGTGGGATAAGCCCAGAAAATTCGTGTGGTCTAAGTGGGGAATGTGAGCAAGGAAGCAAAGGATTTGAGGCAGAGGAGGAAGAATCTAGAAGTAAAAGAAGGAGGAATGAGAGTCGATCCAATGAAGCAGCCGTGTCGGAGGAAGCATTAATCGAGCCACGCATTGTGCTGCAGAGTTCTACAGATTCAGAGATAATTGGAGATGGCTTCCGCTGGAGGAAGTACGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTACAGATGTACAAATGTGAAGTGTAATGTTCGAAAGCACGTGGAGAGAGCAATAGATGATCCAAGAGCATTTGTCACTACATATGAGGGAAAGCACAATCACGAGATGCCAATCAAGAACATCAACCCAAATGTCCCCTCTGAGAGAGATTCACAAGCTTCTCTTAGTAAAGACAAACCATGA 1401 0.4454 MDIDEAERVVVAKPVASRPNCSTFRSFSELLAGAINASSPQIESSQATVSAIRPKTVRFKPALNRTPAASVASQDDIFEAALCDSSHKSPNSDTKQSLIYKPMAKLVSRTTVSLLANMGNCRTIQQQSGQSMEGGLHHISHESFGTNLSSDLYHSHSITPPSETTEPCKMMQQNIEEDQKALTSAINCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHPKPQPPKRSGTAGMQGSGMVPDGVPQDVWSNNHSERNDSRIENQNDTGLPANSVYGVKVSQPNDSILNACGISPENSCGLSGECEQGSKGFEAEEEESRSKRRRNESRSNEAAVSEEALIEPRIVLQSSTDSEIIGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRAFVTTYEGKHNHEMPIKNINPNVPSERDSQASLSKDKP* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1164 466 SUPERFAMILY WRKY DNA-binding domain 191 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 ProSiteProfiles WRKY domain profile. 378 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 MobiDBLite consensus disorder prediction 336 359 - -
Amo06g1164 466 ProSiteProfiles WRKY domain profile. 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 Pfam WRKY DNA -binding domain 194 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 Pfam WRKY DNA -binding domain 385 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 446 - -
Amo06g1164 466 MobiDBLite consensus disorder prediction 440 466 - -
Amo06g1164 466 MobiDBLite consensus disorder prediction 242 304 - -
Amo06g1164 466 SUPERFAMILY WRKY DNA-binding domain 378 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 Gene3D WRKY domain 369 444 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 Gene3D WRKY domain 178 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 SMART WRKY_cls 383 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1164 466 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 446 IPR044810 GO:0003700
Amo06g1164 466 MobiDBLite consensus disorder prediction 329 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1164 Amo-Chr6 20419722 20423055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1164 91 444 WRKY Transcription Factor Family AT2G37260 42.706 6.53e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g1164 WRKY 5.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1164 - - gmx:100794069 675.626