Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1157 ATGTTGCCCGGTGACCCCTTTTCGCTATCCACTTCTCTCGCTGCTGCTGGGTTCACCCAAGACCAAAACTTAAACTCCATCGCAAACCCTAACCCTAAACCTAAACCTAATAGTAATCCCCCTCCAGCCACCAACAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCAGAAGTCATTGCTCTTTCGCCGAAGACGCTCATGGCGACGAACAGATTCATCTGCGAGATATGCAACAAAGGATTCCAGAGGGATCAGAATCTTCAGCTGCACAGGAGGGGACACAACCTGCCATGGAAGCTGAGACAGAGGACGAACAAGGAGGTGAAGAAGAAGGTGTACATCTGCCCGGAGAAGAGCTGCGTCCACCACGAGCCGGCAAGGGCGCTGGGCGACCTGACAGGGATCAAGAAGCACTTCAGCAGAAAGCATGGCGAGAAAAAGTGGAAGTGCGAAAAATGTTCCAAGAAGTACGCTGTCCAATCTGATTGGAAAGCTCACTCCAAAACCTGCGGCACCAGAGAATATAAATGTGACTGTGGCACCCTCTTTTCCAGGAAGGATAGCTTTATTACTCACAGAGCATTTTGCGATGCATTGGCTGAGGAGAGTGCGAGGCTGAACTCGGTTTCTACGTCGACGAATCTGAGTTTCAAGAGCGAAGAGGCAACAACGCAGCAGGGAGTTCTGAATAATAATGTTGGGGGCGGAGTTGGATTTCGATTTGATTTCAATAATGAAATGGGAATGGTTGGTGCAGAACAAGAACAAATTATGAGGCCAAACTTGTCACTGTGGTTGAACCAACAACATGGAAACAACCGTCATCAGATTAATCAATTTGATATGCCATCCTCATCAAGCTCTCATCATCAAGTTATGCACATGCCTATGCCTATGTTGCCTAATGATTTTGGAATGCTTGCTCCCAATTCATCAAAGGTATCGGAAGAAGGTGGGGGCTCAGATCATAATTCAGGTTTGGCATCTATGTATTCTGAGAATCAAAGCAAGCAATCATCAAAGGCACCTTCACCTTCAACTTATTCTCCGATGTCAGCCACTGCGCTTCTTCAGAAGGCAGCGCAAATTGGGTCCACCAACAACCCTTCAACTTTCAGTGCAAGTTTTGGGCTCATGACCTCTTCATCTTCCATTCAAACCACTACTGCTAGTAATTCAAACCAAAACCAACAGGGAAGAAGAATTGATCAGAGTATTAGGCAGCCAGATCAGTGTTTTAGCGCATTAATGCATTCGTCACAAAGTTTTGATGATCAGTTTTTGAGTAATCATCATCCTGGTTCATCAAGTGCTGCGGGGCATAACAATAATTTTACAAGAGACTTTCTTGGCATGAGTAGAGGACCATTCCTACCCCAAGAGCTAGCAAAGTTTGCTTCCGTAGGCTCATCAATGGGTTTGACCCAATTCACTACTAGCGCAACCCATCAATGA 1464 0.4611 MLPGDPFSLSTSLAAAGFTQDQNLNSIANPNPKPKPNSNPPPATNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYICPEKSCVHHEPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLNSVSTSTNLSFKSEEATTQQGVLNNNVGGGVGFRFDFNNEMGMVGAEQEQIMRPNLSLWLNQQHGNNRHQINQFDMPSSSSSHHQVMHMPMPMLPNDFGMLAPNSSKVSEEGGGSDHNSGLASMYSENQSKQSSKAPSPSTYSPMSATALLQKAAQIGSTNNPSTFSASFGLMTSSSSIQTTTASNSNQNQQGRRIDQSIRQPDQCFSALMHSSQSFDDQFLSNHHPGSSSAAGHNNNFTRDFLGMSRGPFLPQELAKFASVGSSMGLTQFTTSATHQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1157 487 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Amo06g1157 487 Gene3D Classic Zinc Finger 53 128 - -
Amo06g1157 487 MobiDBLite consensus disorder prediction 1 57 - -
Amo06g1157 487 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Amo06g1157 487 MobiDBLite consensus disorder prediction 303 354 - -
Amo06g1157 487 PANTHER ZINC FINGER PROTEIN JACKDAW 5 472 IPR033243 GO:0003700
Amo06g1157 487 SMART c2h2final6 116 146 IPR013087 -
Amo06g1157 487 SMART c2h2final6 75 97 IPR013087 -
Amo06g1157 487 SMART c2h2final6 151 171 IPR013087 -
Amo06g1157 487 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Amo06g1157 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Amo06g1157 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 472 - -
Amo06g1157 487 Gene3D Classic Zinc Finger 129 208 - -
Amo06g1157 487 MobiDBLite consensus disorder prediction 328 354 - -
Amo06g1157 487 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1157 Amo-Chr6 19417161 19419413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1157 1 472 IDZ Gene Family AT5G03150 47.269 7.86e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g1157 zf-C2H2_jaz 7.1e-05 CL0361