Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1156 ATGGACAAGGATACTAGTTTGGAAATCCATCTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAAGAGTTAATTGTTCACTATCTAAGAAACAAAGTCACTTCTTCACCACTTCCTGCCTCATTCATAGCAGAGATAGACCTCTACAAGTTCAATCCATGGGAGCTTCCAAGCAAAGCTTTGTTTGGGGAAGAAGAGTGGTATTTCTTTACTCCAAGAGAGAGGAAGTACCCAAATGGAGTGAGACCAAACAGAGCAGCTGGTGCAGGTTACTGGAAGGCCACTGGAACTGACAAACCAATTATCACGTCAGGTGGTATGAAGAGCATTGGAGTGAAGAAAGCCCTTGTCTTCTACAAGGGACGTCCCCCAAAGGGATCCAAAACTGATTGGATCATGCATGAGTATAGGTTGCATGATTCACTCCTCTCAAATTCTCACAAAAGAGGCTCCATGAGACTTGATGAGTGGGTGCTATGCCGGGTGAGACAGAAAACAGGCAGCCCAAGAAGCACTTTGGAAGATCCAAGTGAACTGATTTATGAACCAACAAAAAAGATTCAACAAATGAATGATGAGAACTTCAATCCTGAACTAGTAAAAGCCTCCATTGTGCACAACGAATTTCCAATGTTACCTTATATTCTGGCTTCTAGGAGTACTTTGCCTAATTCCATTGGTGTGTCCTCAAGCACAGGCTTTGTTAGAAATTGTGATATGAAACAATATGGTTCAGTGCATGAAGACAACAACTTGAATGTAATAGGAGCACAGTTCTTAGCATCTGCAATGGAGGGCTTGTATAATAATCCTCTGAAGAGAAAATTCATTGAACAAGAAGAAAACCATTTGGAATATGCTCCCCCAAATAAGAAAATAAGCCTAGAACTTGGTGATGATGTTGATAATAGTGATGATAAGCCAAGTCTTGTGATGGATACAAACAAAGGCTACAATTTTGGCTTCTTTGATCAGTGGAATTCAATCATACAACCTCAAGAGCTTAACAGCTTAGCCTTCATGGGATATTCATGA 1035 0.4097 MDKDTSLEIHLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKFNPWELPSKALFGEEEWYFFTPRERKYPNGVRPNRAAGAGYWKATGTDKPIITSGGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSLLSNSHKRGSMRLDEWVLCRVRQKTGSPRSTLEDPSELIYEPTKKIQQMNDENFNPELVKASIVHNEFPMLPYILASRSTLPNSIGVSSSTGFVRNCDMKQYGSVHEDNNLNVIGAQFLASAMEGLYNNPLKRKFIEQEENHLEYAPPNKKISLELGDDVDNSDDKPSLVMDTNKGYNFGFFDQWNSIIQPQELNSLAFMGYS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1156 344 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Amo06g1156 344 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Amo06g1156 344 PANTHER NAC TRANSCRIPTION FACTOR 56 2 298 - -
Amo06g1156 344 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 298 - -
Amo06g1156 344 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Amo06g1156 344 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1156 Amo-Chr6 19361607 19365498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1156 11 170 NAC Transcription Factor Family AT1G69490 71.250 1.95e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo06g1156 NAM 8.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1156 - - gmx:100788799 481.87