Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1154 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATTACCTTGGAGGTGGAGTCCTCCGATACCATCGACAATGTGAAGGCTAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACCCTTGCCGACTATAATATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGGCATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTGGAGGTTGAATCCTCCGACACAATCGACAACGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCCGATCAGCAGCGACTCATCTTCGCAGGGAAACAGCTAGAGGATGGTCGCACCCTCGCCGATTACAACATTCAAAAGGAGTCCACGCTCCACCTTGTTCTCCGTCTTCGCGGCGGCATGCAGATCTTTGTGAAAACCCTAACGGGAAAGACCATAACTCTCGAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCTGGGAAGCAATTAGAGGACGGGAGGACGCTTGCTGATTACAACATACAGAAGGAGTCGACGTTGCATCTTGTTCTTAGGTTGCGTGGAGGGATGCAGATTTTCGTGAAGACTCTAACCGGGAAGACGATAACGTTAGAGGTGGAGAGTTCTGATACTATTGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCGGACCAGCAGCGTCTAATCTTTGCTGGGAAGCAGCTTGAGGACGGACGCACTCTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCATCTTGTTCTCAGGCTCCGTGGCGGTGAACTCTGA 888 0.518 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1154 295 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Amo06g1154 295 Pfam Ubiquitin family 220 291 IPR000626 GO:0005515
Amo06g1154 295 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Amo06g1154 295 Pfam Ubiquitin family 166 215 IPR000626 GO:0005515
Amo06g1154 295 Gene3D - 218 295 - -
Amo06g1154 295 Gene3D - 153 217 - -
Amo06g1154 295 Gene3D - 77 152 - -
Amo06g1154 295 Gene3D - 1 76 - -
Amo06g1154 295 ProSiteProfiles Ubiquitin domain profile. 143 217 IPR000626 GO:0005515
Amo06g1154 295 SMART ubq_7 218 289 IPR000626 GO:0005515
Amo06g1154 295 SMART ubq_7 153 213 IPR000626 GO:0005515
Amo06g1154 295 SMART ubq_7 1 72 IPR000626 GO:0005515
Amo06g1154 295 SMART ubq_7 77 148 IPR000626 GO:0005515
Amo06g1154 295 PANTHER POLYUBIQUITIN-LIKE 69 168 - -
Amo06g1154 295 CDD Ubl_ubiquitin 77 152 - -
Amo06g1154 295 CDD Ubl_ubiquitin 218 293 - -
Amo06g1154 295 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Amo06g1154 295 PANTHER UBIQUITIN 169 294 - -
Amo06g1154 295 PANTHER UBIQUITIN 1 77 - -
Amo06g1154 295 ProSiteProfiles Ubiquitin domain profile. 218 293 IPR000626 GO:0005515
Amo06g1154 295 PANTHER POLYUBIQUITIN-LIKE 1 77 - -
Amo06g1154 295 PRINTS Ubiquitin signature 32 52 IPR019956 -
Amo06g1154 295 PRINTS Ubiquitin signature 11 31 IPR019956 -
Amo06g1154 295 PRINTS Ubiquitin signature 53 74 IPR019956 -
Amo06g1154 295 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Amo06g1154 295 SUPERFAMILY Ubiquitin-like 217 293 IPR029071 -
Amo06g1154 295 SUPERFAMILY Ubiquitin-like 152 217 IPR029071 -
Amo06g1154 295 PANTHER POLYUBIQUITIN-LIKE 169 294 - -
Amo06g1154 295 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Amo06g1154 295 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Amo06g1154 295 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Amo06g1154 295 CDD Ubl_ubiquitin 1 76 - -
Amo06g1154 295 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Amo06g1154 295 PANTHER UBIQUITIN 145 218 - -
Amo06g1154 295 PANTHER UBIQUITIN 69 168 - -
Amo06g1154 295 ProSitePatterns Ubiquitin domain signature. 244 269 IPR019954 -
Amo06g1154 295 PANTHER POLYUBIQUITIN-LIKE 145 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1154 Amo-Chr6 18852683 18854473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1154 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.39e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1154 - K08770 sly:101267758 561.992