Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1149 GAACAGTGGCCAGTTCCATCGATTTCTTCTTCTTCCGCTGCGATATGTTTATGTGACACACACAAAACACAGAACAAAAAGGGGAAAATATTTGCAATGCTTAGTGTTATGGGTCTGTTGTTGCTGCCGATGGATTCGGTAGCGTGCAGGGGGTTGCTTTACGCGCTCTTTATACTCAACTTTGTTTTGGTTTGCCAACTCATTCTCCTTCAGCCTCTAGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGAGTTATTTGATAAGGTATCTGAAAGTATAAAAGTTAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCCATAGAAGCAGACCCAAATCTTTCAGAAGCATATCTATTCCGTGCATCAGTTCTTCGTCAATTGTGCAGATATGAGCAATCYGAGGGGAGCTACAAGAAGTTTCTGGAGCTCAAACCTGGACATTCAACTGCAGAAAAGGAGCTCTCCCAGCTATTGCAGGCTAAGAGTGCCCTAGAAACAGCTCAGTCCCTTTTTGGTTCAGGAAACTTCATAAAATCTTTAGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCATWGAGGCTAAGCTACTGAAAGTGAAGTTATTGATAGCTGATAAAGAGTATGAAAATGCCATAGCTGAGTCTGGATTCCTTCTTAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTGCGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACCAGGCATTACCAGAAAGGCCTCCGCCTGGATCCAGAGCACAGTGAATTAAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGACAAAAAGTGCTGAAGATAATGCAAACAAGGGTAAACTCCGTGTGGCAGTGGAGGAATTCAAAACTGCACTTGCAGTTGACCCTGATCATCTTGCACATAATGTTCATCTTCATCTAGAATTATGTAAAGTCCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAATGAAGCTCTTAAAATCAATGAGGAGCTTCTTGAAGCCCTTGTTCAGAGGGGAGAAGCCAAACTTCTAATAGAGGATTGGGAGGGAGCTGTTGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGAYATGAATATCCGTGAAGCAGTAATGAGGGCTGAGAAAGCTCTAAAGCTGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATCTCAAAAACAGCTTCCGCCYCTGAGATAAAACGCGCATACAAGAAACTTGCTTTGCAATGGCACCCGGATAAGAATGTAGAAAACAGGGAAGAAGCAGAGGCTAAGTTCCGAGAAATCGCTGCAGCATATGAGGTACTTAGTGACGAAGGCAAACGCACAAGATATGATAGAGGGGAGGACCTTGAAGACATGGCCGGTGGCGGGGGTGGTGGGTTCAATCCATTTGGTGCCGGTGGGTTTGGTGGACAGCAGTATCACTTCACATTCGAAGGTGGCTTTCCCGGTGGTGGTTTCGGAGGAGGCTTTCCCGGGGGTGGGGGATACGAGTTCCATTTTTGA 1575 0.4324 EQWPVPSISSSSAAICLCDTHKTQNKKGKIFAMLSVMGLLLLPMDSVACRGLLYALFILNFVLVCQLILLQPLVSASGGKSGNAAELFDKVSESIKVKHYTEALDDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSEGSYKKFLELKPGHSTAEKELSQLLQAKSALETAQSLFGSGNFIKSLEYIDKVVLVFSPACIEAKLLKVKLLIADKEYENAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNANKGKLRVAVEEFKTALAVDPDHLAHNVHLHLELCKVLVKLGRGKDALDSCNEALKINEELLEALVQRGEAKLLIEDWEGAVEDLKSAAQKSPQDMNIREAVMRAEKALKLSKRKDYYKILGISKTASAXEIKRAYKKLALQWHPDKNVENREEAEAKFREIAAAYEVLSDEGKRTRYDRGEDLEDMAGGGGGGFNPFGAGGFGGQQYHFTFEGGFPGGGFGGGFPGGGGYEFHF* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1149 524 SMART tpr_5 317 350 IPR019734 GO:0005515
Amo06g1149 524 SMART tpr_5 84 117 IPR019734 GO:0005515
Amo06g1149 524 SMART tpr_5 118 151 IPR019734 GO:0005515
Amo06g1149 524 SMART tpr_5 233 266 IPR019734 GO:0005515
Amo06g1149 524 SMART tpr_5 351 384 IPR019734 GO:0005515
Amo06g1149 524 Pfam Tetratricopeptide repeat 234 266 IPR013105 -
Amo06g1149 524 ProSitePatterns Nt-dnaJ domain signature. 448 467 IPR018253 -
Amo06g1149 524 ProSiteProfiles TPR repeat profile. 233 266 IPR019734 GO:0005515
Amo06g1149 524 PRINTS DnaJ domain signature 407 425 IPR001623 -
Amo06g1149 524 PRINTS DnaJ domain signature 425 440 IPR001623 -
Amo06g1149 524 PRINTS DnaJ domain signature 443 463 IPR001623 -
Amo06g1149 524 PRINTS DnaJ domain signature 463 482 IPR001623 -
Amo06g1149 524 Coils Coil 151 171 - -
Amo06g1149 524 CDD DnaJ 405 460 IPR001623 -
Amo06g1149 524 SUPERFAMILY Chaperone J-domain 399 507 IPR036869 -
Amo06g1149 524 Gene3D DnaJ domain 403 513 IPR036869 -
Amo06g1149 524 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 43 524 IPR044620 -
Amo06g1149 524 Coils Coil 441 461 - -
Amo06g1149 524 Pfam DnaJ domain 405 468 IPR001623 -
Amo06g1149 524 SUPERFAMILY TPR-like 98 400 IPR011990 GO:0005515
Amo06g1149 524 Gene3D Tetratricopeptide repeat domain 82 402 IPR011990 GO:0005515
Amo06g1149 524 ProSiteProfiles dnaJ domain profile. 405 471 IPR001623 -
Amo06g1149 524 SMART dnaj_3 404 463 IPR001623 -
Amo06g1149 524 Pfam Tetratricopeptide repeat 97 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1149 Amo-Chr6 18717616 18722553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1149 401 468 C2H2 Transcription Factor Family AT1G74250 47.222 2.54e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1149 K09523 - gmx:100804685 760.37