Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1138 ATGCCAACCCAGAATTCCTACCATCTAAACCAGAAAAGGCTATGGAGATTTGTGGGATTTATGTCATGTGCCAATGGATTTCTGTGTTATGCTAAGAGTTCCTCTTTCAAACATCTATTTGGGGAGTGGAACTTGTTGAAGATCATTCTTTACACCCTGTTAAGTTTCAGCATCAGCACCATCATGCTATTTCCCAAAACATGCAGGCTTTCAAGGAGTTTCTTGCTTAAAGCTTATGTGGGTGTTCTGGTTTTGCTTCTAACCTCTCTCTACTCATTTTTCTCTGATAAATCTGACAATGGAAAACCAGACTTACTAAGCATGATTTCGAATGTTTCTTTCGCTTTGATGTCTTTGTCCCTGTCGAGGCAAATTGATCTTGGCTTTGAAGCAGAGCTTCTCAACTTCTTCCTTGGATGCCTAACTATTCAACTCATGAAGATCAGCTTGATGCTCTCCATCGTTGCAGCCATCTTTTGTTACTCTCTCACGATTCTTCGTTCCAAATCGGAATCTCAATCGCATGTGAGAACACTAAGAATGCAAGATCATGTAACAGTAGATATTGACGCTGCAAATGATGACTACTTAAATGCCTTCCAATGGAGTAACGACGATGGCAAAAAACAAATGCAGGATGATGGATACAGTTGGAGAAAATATGAAGAGAATCCATTGAGAAGAAGGGGAAATCAGATAAGCTTCTACAGATGCTCACACCCGAATTGCAAGGTTAAGAAGAAAGTAGAGAGAACAATAGGTGGGGAAATTATTCATGTAAACTACAAAGGTACTCATGCCCACCGTAATTGCAAGCCTAAATTTCCTATAAAGAGGAACTCATCGTCTGAATCTTTTTATTCACTTCTACCTTCAGAACCTTCCCATACTAAAATTATAGATCAATCATTGGCCTTCAATGGCGATGGACAACTGGATCATGATACGGCACCAGAGAGCTCATCATTATCAATATGA 978 0.3967 MPTQNSYHLNQKRLWRFVGFMSCANGFLCYAKSSSFKHLFGEWNLLKIILYTLLSFSISTIMLFPKTCRLSRSFLLKAYVGVLVLLLTSLYSFFSDKSDNGKPDLLSMISNVSFALMSLSLSRQIDLGFEAELLNFFLGCLTIQLMKISLMLSIVAAIFCYSLTILRSKSESQSHVRTLRMQDHVTVDIDAANDDYLNAFQWSNDDGKKQMQDDGYSWRKYEENPLRRRGNQISFYRCSHPNCKVKKKVERTIGGEIIHVNYKGTHAHRNCKPKFPIKRNSSSESFYSLLPSEPSHTKIIDQSLAFNGDGQLDHDTAPESSSLSI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1138 325 SMART WRKY_cls 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1138 325 Pfam WRKY DNA -binding domain 213 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1138 325 SUPERFAMILY WRKY DNA-binding domain 210 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1138 325 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 5 282 - -
Amo06g1138 325 ProSiteProfiles WRKY domain profile. 207 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g1138 325 Gene3D WRKY domain 199 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g1138 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 5 282 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1138 Amo-Chr6 18263982 18265622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1138 214 283 WRKY Transcription Factor Family AT2G37260 44.286 2.06e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g1138 WRKY 4.2e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1138 - - ccaj:109792596 373.629