Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1114 GATCTCAATCGTTTCCTTCTTCCTTTCTTCTCCAGCGTCCGATTCCTCTCCCATTTCTCACCGGATCTCTCTCCCGCCAAATACAAAAATTCCATAAACATTTCCCAGCACCCAAACCAGGTATTTCAGGTTCCGGCGATCATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGAAGCCACGAGAGCGGTGACCATAGCCCTCGCTCCAACATAAGGGAGCAGGACAGGTTCCTTCCCATCGCTAACATCAGCCGCATCATGAAGAAGGCGCTTCCCGCCAACGGAAAAATCGCCAAGGATGCCAAAGAAACTGTTCAGGAATGCGTCTCCGAGTTTATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTCTCGGTTTCGAGGATTATATTGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGGGTGACACCAAGGGTTCAGCAAAGGGTGGAGACGCTTCTGCTAAAAAAGATGTTCAACCAAGTCCTAATGTTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTACACTAACTCTCAGCATTCTTTTTCCCTCTTATATTCAATATGCTTTGAAGAGTAA 654 0.4862 DLNRFLLPFFSSVRFLSHFSPDLSPAKYKNSINISQHPNQVFQVPAIMADGPASPGGGSHESGDHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDASAKKDVQPSPNVQLAHQGSFSQGVNYTNSQHSFSLLYSICFEE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1114 217 ProSitePatterns NF-YB/HAP3 subunit signature. 108 124 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo06g1114 217 Gene3D Histone, subunit A 64 197 IPR009072 GO:0046982
Amo06g1114 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 204 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo06g1114 217 MobiDBLite consensus disorder prediction 166 188 - -
Amo06g1114 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 141 IPR003958 -
Amo06g1114 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 48 204 - -
Amo06g1114 217 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Amo06g1114 217 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Amo06g1114 217 PRINTS CCAAT-binding transcription factor subunit A signature 143 161 - -
Amo06g1114 217 MobiDBLite consensus disorder prediction 48 70 - -
Amo06g1114 217 SUPERFAMILY Histone-fold 74 174 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1114 Amo-Chr6 17495531 17497455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1114 48 205 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.647 1.08e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo06g1114 CBFD_NFYB_HMF 1.3e-27 CL0012