Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1090 ATGGGGAGAAAAGGAAATTGGTTTTCTTCTGTGAAGAAAGCTCTGAGTCCTGACTCAAAGGAGAAGAAAGAACAGAAATCAAAGAAGAAATGGTTTGGGAAGCAGAAGTTGCAGAGTTCAGGCTCATACCAGGAATCTGATAAAGCACCACCTCTTCTGCCACCAGAAGATGTTAAATTGGCTGATCTTGAAATTGAAAGCGGTCATGATCGTGTTGTTGAAGTTGCAACTTCTGCAGATGTTGAGGAACCTGTTCCTGCTGTTGCAGTTCAGGCACCAGTGGTTAGGGTTGAAGCTGCTACTACCAGTCATACAATTACTCGGTTCTCTGGCAAACCAAAGGAAGAAGTGGCAGCAATTAAGATTCAAACGGCTTTCCGGGGATACTTGGCAAGAAGAGCGCTGCGGGCTTTAAGAGGACTGGTCAGATTGAAGTCATTGATGGAAGGGCCCATTGTTAAGCGCCAAGCGATATGTACCCTTCGCTCTATGCAGACTTTAGCTCGTGTGCAAGGTCAGATTCGTTCTCGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGCGACAGCTCTTGCAGAAGCATGCAAAAGAGCTCGAGAGCATGCGGATTGGCGAGGAATGGGATGACAGCTTACAATCAAAAGAACAGATTGAAGCCAAGTTACTGGGCAAGTATGAGGCTGCTATGAGAAGAGAAAGGGCACTGGCTTATGCATTCACTCATCAGCAAAACGGGAAGAGCTCATCTAAATCTATGAATCCCATGTTCATGGATCCAACCAATCCTAGCTGGGGTTGGAGTTGGCTGGAACGATGGATGGCAGCTCGACCTTGGGAGAGCCGTGGCATGATGGATAAAGAGCTGCACGACCATTCATCCATAAAAAGCTCAAGCCGCAGCATTACTGCTGGGGAAATCAGCAAATCATTTGCTCGTTTCCAGCTAAATTCTGAAACGCACTCTCCAACGGCCAGCCAAAATCCCGGCACACCTAGCTTCCAGTCCCATTCGGCTCCTCCCAAGGCACCGGCTTCTCCAGCAGTCGCTAGGAAACTGAAGAAGGGGAGCCCAAAGGGCAGCTTGGTTTTGGAAGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGGTTTCGGAGGCACTCCATCGCCGGATCATCAGTGAGGGATGATGAGAGCCTTGCCAGCTCTCCATCAGTTCCAAGTTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCAAAGTCCATTAACCATGGAAAATGGGAAAACAGATAAGGGTTCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTTCCGGCTTCACCTGCCAGACCACCCCGGCGGCATTCAGGTCCACCGAAGATAGAAAGCAGTTTAAATGCAGAATTCGCCGTGAGCAACGGTGCGGCCAGTTGA 1437 0.4885 MGRKGNWFSSVKKALSPDSKEKKEQKSKKKWFGKQKLQSSGSYQESDKAPPLLPPEDVKLADLEIESGHDRVVEVATSADVEEPVPAVAVQAPVVRVEAATTSHTITRFSGKPKEEVAAIKIQTAFRGYLARRALRALRGLVRLKSLMEGPIVKRQAICTLRSMQTLARVQGQIRSRRIRMLEENQALQRQLLQKHAKELESMRIGEEWDDSLQSKEQIEAKLLGKYEAAMRRERALAYAFTHQQNGKSSSKSMNPMFMDPTNPSWGWSWLERWMAARPWESRGMMDKELHDHSSIKSSSRSITAGEISKSFARFQLNSETHSPTASQNPGTPSFQSHSAPPKAPASPAVARKLKKGSPKGSLVLEDDSKSMVSVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSQSPLTMENGKTDKGSFGTAKKRLSFPASPARPPRRHSGPPKIESSLNAEFAVSNGAAS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1090 478 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Amo06g1090 478 MobiDBLite consensus disorder prediction 319 341 - -
Amo06g1090 478 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Amo06g1090 478 SMART iq_5 114 136 IPR000048 GO:0005515
Amo06g1090 478 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 474 - -
Amo06g1090 478 MobiDBLite consensus disorder prediction 319 478 - -
Amo06g1090 478 PANTHER IQ-DOMAIN 5-RELATED 1 474 - -
Amo06g1090 478 MobiDBLite consensus disorder prediction 391 432 - -
Amo06g1090 478 MobiDBLite consensus disorder prediction 1 54 - -
Amo06g1090 478 Gene3D iswi atpase 112 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1090 Amo-Chr6 16919990 16923694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1090 1 478 IQD Protein Family AT5G03040 53.955 1.99e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1090 - - gmx:100800080 634.795