Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1069 ATGCTTCAACTTCAGATTCATTTTATACCAGACGTTCGGTTGAGTTGTTGTCGTTCGGGTGTAGGTCAGGACTTTTTGGGTCCCTTCTGTGTTGTTGATGACCAGTTTGTTCCCAAGGTTGGAATGACTTTTAACACCCTTGAAGATGCTGCAAAATTTTACAAGGACTATGCCAAGGCTGCAGGTTTTTCTACAAGAGATCGGAGCACAAATAAGAAGGGAAACAAAATTAAGAATCAATTGATTACATGTAACAGAAAGGGAAAATGGAAATCTAAAATATTTTCGACTGGGAAGACAAATCCCACAGTTGGTTTAAATTTTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGTTCGTGCTGCATCATTCACACCCTTGCTGTCCAACTCAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATTCGGTCATACTGTGTGCAACAAAATCCTCCGCTGAAGCTCAATTTCAAGAAGTCTACACTCACCAAAAGTTTAGGGAAGTCCAAGCACAATTCAGAGGAAAGGCGAATTACATCACAAGATTAACGAACTCTGCTCTAGGCTATTCATTATACGAAGTTGGAGAACAAGTTTCTAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAATAGCATCCCGAGTGAAATGCCAATGCTTATTATTTGAGTCAAGAGGCATATTGTGTCGTCACGCACTAAGCATGTTAAGCTTTGAACGAGTAACCCAAGTAGAACACACACACATCAAGAGTAGCCACGACGAGCCACTATTGGAGCCAAGAAGTAATAGGTTTGACAAATTGTCGGAGGAGCTGACTGCCATTCTGCACCATGCGTACGATAACGTCATGGTTGAGATGGAAGAACTTAAAGCCAAAAGGAAGGGGACATGTTCGTTATCTCACGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGGATTGCAAATGCCTCAAAGAAGAAGAAAACAAAAGCTTTAAACGAGTTAAACCTCTTTGATGCGCATCAGTGGTGCTTTATAGAACCAGCAGCAAGGGATAGTTCATTCTGGCATCGGATGGACATGTCTTGTGATATGGGTCGACCACCCATAACCACCAATGGTTTGAATAGCAAACAGGTGCAAAAATCTGAAGCATGTCCACATTGA 1242 0.4179 MLQLQIHFIPDVRLSCCRSGVGQDFLGPFCVVDDQFVPKVGMTFNTLEDAAKFYKDYAKAAGFSTRDRSTNKKGNKIKNQLITCNRKGKWKSKIFSTGKTNPTVGLNFPARIYIHTLKDVGAWIISKFVLHHSHPCCPTQAEMLKQHRELSMEQAERESDAADFHSVILCATKSSAEAQFQEVYTHQKFREVQAQFRGKANYITRLTNSALGYSLYEVGEQVSSSIFNKFVVTYDSIASRVKCQCLLFESRGILCRHALSMLSFERVTQVEHTHIKSSHDEPLLEPRSNRFDKLSEELTAILHHAYDNVMVEMEELKAKRKGTCSLSHEDANLESVNELQSPPRIANASKKKKTKALNELNLFDAHQWCFIEPAARDSSFWHRMDMSCDMGRPPITTNGLNSKQVQKSEACPH* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1069 413 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 152 277 IPR031052 GO:0006355
Amo06g1069 413 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 147 IPR031052 GO:0006355
Amo06g1069 413 Pfam SWIM zinc finger 232 262 IPR007527 GO:0008270
Amo06g1069 413 Pfam FAR1 DNA-binding domain 52 137 IPR004330 -
Amo06g1069 413 PANTHER OS03G0843700 PROTEIN 152 277 - -
Amo06g1069 413 PANTHER OS03G0843700 PROTEIN 34 147 - -
Amo06g1069 413 SMART 26again6 241 268 IPR006564 GO:0008270
Amo06g1069 413 ProSiteProfiles Zinc finger SWIM-type profile. 230 266 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1069 Amo-Chr6 16119257 16123824 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g1069 FAR1 1.2e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1069 - - adu:110276980 330.872