Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1058 ATGGCTTTTTCCAATCTTGGCTTCCTCTTTATCCTTATCATCTTTGTCCATGTTGATGCAGATGACTTTCACTGGTCAGGGTCCTATTGTTCATCACTTAACAAAACCACCCCTAACAGTCCTTTCCAGTTGAACCTAAAGACCCTTTTCAAGTACCTATCTTCCAATGCCACCACGGGCAACAAGGAATTTTACAGCACCAAAGTCCTTGGCACAAACCACTTTGATACAATATATGGACTCTACTTGTGCAGGGGTGACCTCCCTTCTCAACTTTGTGGAAAGTGCATCTCAGAAGCAACCCATAGCTACTTGTTCCCAGACCCAGACCAAGGAATAGACGATTGCTCCTCATCCATAGAGGGAGGAATTTCGTATGACGAGTGCATGGTTCAATATTCCAATAACTTCACTTACTTCTCCGCAGTCGACTTAACGCCTTCTAGTTCTTGCTTGTCAAGCAATATGTCTGCAACCTTCGTGAATTTAGTGTTTGACACTCTGAACAAAATTGCAGATAAAGCATCTCAAGGTTCTACAGAGAAGTATGCTACAAAACAAGTAAGAATATCTGGATTTCAGTCCCTATACTCTTTGGCTCAGTGTACACCAAACTTGTCATCTCAAGATTGTAGAACTTGTTTAGGCAACATGATAAAACAAGTTAAACAAGTGTGCGGTGGAAGTGGAAACGAAGCAACAAGTTCGAGCCGCAGCTGCAACTTGAAGTATGCTATGTACCCTTTCTATCGTGAAAGTAAAAGCCTGGCACCAGTAGGACTCATTCCTATAACAAATCTGTCAAATGATTTTGGCTATCTTTCCCACAACTGTTCAACTTCAACCAATGAAACCATCATCAAGAACAGTCATTTTGAATCTAACCTCAGGAACCTCCTCTCTTCCTTGTCTTCTAATGCCACCGACAAAATTGGCTTCTACAAGACCACCATTGGTGGCGGAGATGACACGGTCACCGGTCTCTTCATGTGCCGTGGCGATGTGTCCCTTAGTCTCTGTCAACTCTGTGTCCAAACCGCTGCTAAACGAATACATTCAGAGTGTAGTTCATCCAAGGAAGCCATCATTTGGTACACTCATTGCCTTCTTCGCTACTCCTATCGATCTCCCCTCCCCACCTGGAACGACACGAGTCCCTGTTTCATGAGTTCAACATTGCCAACACCTCCAACCTTGACCAAGAAGCAACAGAACTCCTTCACTCTCACATTAGAGGAGAGCACCACCAAGAATTATGTAACTGCAACCGCAAAACTGAATGGTGTCCAAACTCTATATGCTCTCGGCGAATGCACACCAGATCTAAATAGTGGAGATTGCAGCTCTTGCTTACAGAACATTTTCCTATATGAAATTCCATGGTGTTGTTTGTCAAGTCCAGAGGGAAAAGTTTTTTATCCTAGCTGCTATATGATGTTTGGATTGTCCAAATTTCATGGAGATGATGATCGAGTTGAGACACCTAGTCAGGCTGTCTTCCTCCAGGAGATCCACGAGAGAAATGGTAGGTATCAGAAAAAAATTCCGTTGATTGTTGTTCCCACTATTGTTGCTGGGATGCTCTTCTTATGTTCTGGCTGGCATTTGTTAAGAAGAAAAGAAAGCAAGAGATACAAAACTATTCTCAGAGAAAATATTTTTGGTGATGAAGGTAGTACTTTGGAGCCATTGCAAATGGATTTGGCTATAATTGAGGCAGCAACAAATAACTTTTCAACTGAGAACTTGATTGGGAAAGGTGGATTTGGAAATGTTTATAAGGGTATTCTTTCTGATGGGAGACATGTAGCTGTAAAAAGATTATCAAAAATTTCTAAACAAGGTATTAAGGAGTTCAAGAATGAGGTGTTGTTGATAGCTAAATTTCAACATCGGAATCTTGTAACATTCATAGGTTTCTGCTTGAAAGATCAAGAGAAGATACTGATATATGAATATGTACCAAATGGAAGCCTTGATTACTTTTTATTTGATACTCAGCAACAAAAGTTGTTAAATTGGTCTCAGCGTTATAAAATTATAAAAGGAGTTGCACGAGGAATTCATTATTTACATGAGCATTCTCGACCCAAAATTATTCATCGTGATCTTAAACCAAGTAATGTCCTGTTAGATACAAGTATGAATCCAAAAATTTCGGACTTTGGCATAGCTAGAATTGTGGAAATGGACCGAGACCAAGAAATTACAAACAAAATTGTTGGGACATTTGGTTATATGTCTCCGGAATATGCAATGCTTGGATATTTTTCCGAAAAATCAGATATTTTTAGTTTTGGAGTTATGATTCTAGAAATTGTTACTGGAAAAAAGATTTTAACTTCTTATGATTGTTATCATCTTGCTTCAGGCCTACTAAATTATGTTTGGGAAAAGTGGACAGAAAACAAAGCATTAAGCATATTGGACCAAAAAATAAAAGGAAATTATCTTGAAATTGAAGTCATTAAGTGTATTCAAGTTGGATTATTATGTGTTCAAGAAAATCCAGATGTTAGACCTCCAATGATAACAATTATTTCATATCTTGATAACCACTTAATTGAAATGCCATCTCCACAAGAGCCAGCATTTATGTTACATAGAAGAATAATTGATCAAGTACAAGTAGTTGGTGGTGCGTCAAGCTTTGATCATATCAACAATTTTACGCCATCCTCTATCAATGAGATGTCTATAAGTGAAGATCTTTCTAGATAG 2721 0.3885 MAFSNLGFLFILIIFVHVDADDFHWSGSYCSSLNKTTPNSPFQLNLKTLFKYLSSNATTGNKEFYSTKVLGTNHFDTIYGLYLCRGDLPSQLCGKCISEATHSYLFPDPDQGIDDCSSSIEGGISYDECMVQYSNNFTYFSAVDLTPSSSCLSSNMSATFVNLVFDTLNKIADKASQGSTEKYATKQVRISGFQSLYSLAQCTPNLSSQDCRTCLGNMIKQVKQVCGGSGNEATSSSRSCNLKYAMYPFYRESKSLAPVGLIPITNLSNDFGYLSHNCSTSTNETIIKNSHFESNLRNLLSSLSSNATDKIGFYKTTIGGGDDTVTGLFMCRGDVSLSLCQLCVQTAAKRIHSECSSSKEAIIWYTHCLLRYSYRSPLPTWNDTSPCFMSSTLPTPPTLTKKQQNSFTLTLEESTTKNYVTATAKLNGVQTLYALGECTPDLNSGDCSSCLQNIFLYEIPWCCLSSPEGKVFYPSCYMMFGLSKFHGDDDRVETPSQAVFLQEIHERNGRYQKKIPLIVVPTIVAGMLFLCSGWHLLRRKESKRYKTILRENIFGDEGSTLEPLQMDLAIIEAATNNFSTENLIGKGGFGNVYKGILSDGRHVAVKRLSKISKQGIKEFKNEVLLIAKFQHRNLVTFIGFCLKDQEKILIYEYVPNGSLDYFLFDTQQQKLLNWSQRYKIIKGVARGIHYLHEHSRPKIIHRDLKPSNVLLDTSMNPKISDFGIARIVEMDRDQEITNKIVGTFGYMSPEYAMLGYFSEKSDIFSFGVMILEIVTGKKILTSYDCYHLASGLLNYVWEKWTENKALSILDQKIKGNYLEIEVIKCIQVGLLCVQENPDVRPPMITIISYLDNHLIEMPSPQEPAFMLHRRIIDQVQVVGGASSFDHINNFTPSSINEMSISEDLSR* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1058 906 Gene3D Transferase(Phosphotransferase) domain 1 654 861 - -
Amo06g1058 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 259 - -
Amo06g1058 906 ProSiteProfiles Gnk2-homologous domain profile. 274 377 IPR002902 -
Amo06g1058 906 CDD STKc_IRAK 584 852 - -
Amo06g1058 906 Pfam Protein kinase domain 579 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g1058 906 ProSiteProfiles Gnk2-homologous domain profile. 381 485 IPR002902 -
Amo06g1058 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 507 892 - -
Amo06g1058 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 488 - -
Amo06g1058 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 259 - -
Amo06g1058 906 Gene3D - 389 485 IPR038408 -
Amo06g1058 906 Gene3D - 147 249 IPR038408 -
Amo06g1058 906 Gene3D - 24 137 IPR038408 -
Amo06g1058 906 Gene3D - 271 376 IPR038408 -
Amo06g1058 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Amo06g1058 906 SUPERFAMILY Protein kinase-like (PK-like) 562 874 IPR011009 -
Amo06g1058 906 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Amo06g1058 906 ProSiteProfiles Protein kinase domain profile. 578 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g1058 906 SMART serkin_6 578 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g1058 906 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Amo06g1058 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 507 892 - -
Amo06g1058 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 268 488 - -
Amo06g1058 906 ProSiteProfiles Gnk2-homologous domain profile. 24 138 IPR002902 -
Amo06g1058 906 Pfam Salt stress response/antifungal 157 245 IPR002902 -
Amo06g1058 906 Pfam Salt stress response/antifungal 30 135 IPR002902 -
Amo06g1058 906 Pfam Salt stress response/antifungal 278 373 IPR002902 -
Amo06g1058 906 Pfam Salt stress response/antifungal 405 480 IPR002902 -
Amo06g1058 906 Gene3D Phosphorylase Kinase; domain 1 540 653 - -
Amo06g1058 906 Coils Coil 905 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1058 Amo-Chr6 15742536 15747427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1058 250 901 Receptor kinase-like Gene Family AT4G05200 41.090 4.91e-162 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo06g1058 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1058 - - gmx:100785282 893.264