Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1012 ATGAGTCAGATGAAGAGAGAAATAGATCAAATAGACTTGGCGAATTGCCTTATGCTTCTCTCTAATAATCCAATAATTAGAAAGAAAAGAAGCCTCAATAACAATGGTGAAGTGGAATTCGAGTGCAAGACATGTAACCGCAAGTTCCCATCGTTTCAAGCACTTGGAGGCCACAGAACAAGCCACAACAAGAAGCCAAAGCTGGAATCAGAACCCAACAACAACAACAACGTTGATACTAAGCCGAAGATGCACGAGTGCTCCATTTGTGGCCAAGAATTCTCTCTTGGTCAGGCACTCGGAGGCCACATGAGAAGGCACAGATCACCAAATGATCAACATCAACAACTTGTGTCTTCTATCAATGAGATTCAACATGTTGTTGCTAAAGTTCCGGTTTTCAAGAGATCTAATAGTCTAAGGGTTAGGTGCTTGGACTTGAACCTAACACCATTGGAGAATGATTTGAAGCTGCTCTTTGGAAGTATTACTCCTAATAATAAGCTTCATGCCTTAGTTTGA 522 0.4119 MSQMKREIDQIDLANCLMLLSNNPIIRKKRSLNNNGEVEFECKTCNRKFPSFQALGGHRTSHNKKPKLESEPNNNNNVDTKPKMHECSICGQEFSLGQALGGHMRRHRSPNDQHQQLVSSINEIQHVVAKVPVFKRSNSLRVRCLDLNLTPLENDLKLLFGSITPNNKLHALV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1012 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Amo06g1012 173 SUPERFAMILY beta-beta-alpha zinc fingers 40 107 IPR036236 -
Amo06g1012 173 MobiDBLite consensus disorder prediction 53 78 - -
Amo06g1012 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Amo06g1012 173 Gene3D Classic Zinc Finger 37 107 - -
Amo06g1012 173 Pfam C2H2-type zinc finger 40 64 - -
Amo06g1012 173 Pfam C2H2-type zinc finger 85 110 - -
Amo06g1012 173 SMART c2h2final6 85 107 IPR013087 -
Amo06g1012 173 SMART c2h2final6 40 62 IPR013087 -
Amo06g1012 173 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Amo06g1012 173 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Amo06g1012 173 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 166 - -
Amo06g1012 173 PANTHER ZINC FINGER PROTEIN ZAT5 10 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1012 Amo-Chr6 14099578 14100273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1012 2 161 C2H2 Transcription Factor Family AT2G37430 47.024 5.47e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g1012 zf-C2H2_6 4.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1012 - - gmx:100527151 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1654 16 32097885 32098591 Amo06g1012 06 14099578 14100273 hybridization
Amo06g1012 06 14099578 14100273 Amo12g1055 12 27962287 27963218 PCT
Amo12g1055 12 27962287 27963218 Amo06g1012 06 14099578 14100273 PCT