Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1006 ATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTATGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACGAATCCGATAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCATACCCTTACTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCATCGTACAATAGAGAATAACAAGGACGTTGGTATTAGACCAAGTAAAACTTACCAATCATTTGTTGTGGCTGCCGGGGGTCATCGCGAGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACAGTCATACCGTGTGCAACAAAATCCTCCATTGAAGCTCAGTTTCAACATGTAGAAAAGGCAAATTGCATCACAAGATTAACAAACTCTGCTCTAGGCTATTCAGTATACGAAATTGGAGAACAAGTTTGTAGCTCAATATTCAAGAAGTTTGTGGTTATTTACCACTCAGTAGCAGCTGAGGTGAAATGCCAATGCTTATTATTCGAGTCAAGAGGGATATTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAACCCAAGTGTCACCGAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGGAGCCACGACGAGCCAATGTTGGAGCCAAGAAGCAAGAGGTTTGACAAATTGGTTTTTCATTCGCAAAATATTTGCGAATTTGCATCAGAATCAGAGGAGCTGACTGCCATTCTGCACCGTGCGTACGATAACGTCATGGTTAAGATGGAAGAATTGAAAGCCAAAAGGAAGGGTACATGTTTGTTATCTCATGAAGAAGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGAATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGATAAACAGATTGCAAATGCCGCAAAGAAGAAGAAAACAAAAGATTTAAACGAGAGGTGCCCTCAGCATATACTCTCATTCTTGAAATTACATGCCCCTTAA 1194 0.4171 MTFTTLEDAGKFYRNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPIAGLNCPARIYIHTLKDVGAWIISKVVLDHSYPYCPSKAEMLKQHRELSMSIHRTIENNKDVGIRPSKTYQSFVVAAGGHREEQAERESDAADFHTVIPCATKSSIEAQFQHVEKANCITRLTNSALGYSVYEIGEQVCSSIFKKFVVIYHSVAAEVKCQCLLFESRGILCRHALSVLSFERVTQVSPRYILERWSKKVKRRHTHIKRSHDEPMLEPRSKRFDKLVFHSQNICEFASESEELTAILHRAYDNVMVKMEELKAKRKGTCLLSHEEANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANAAKKKKTKDLNERCPQHILSFLKLHAP* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1006 397 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 194 324 IPR031052 GO:0006355
Amo06g1006 397 ProSiteProfiles Zinc finger SWIM-type profile. 207 243 IPR007527 GO:0008270
Amo06g1006 397 SMART 26again6 218 245 IPR006564 GO:0008270
Amo06g1006 397 PANTHER OS03G0843700 PROTEIN 1 111 - -
Amo06g1006 397 PANTHER OS03G0843700 PROTEIN 194 324 - -
Amo06g1006 397 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 111 IPR031052 GO:0006355
Amo06g1006 397 Pfam SWIM zinc finger 217 240 IPR007527 GO:0008270
Amo06g1006 397 Pfam FAR1 DNA-binding domain 11 94 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1006 Amo-Chr6 13849948 13853747 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g1006 FAR1 2.6e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1006 - - adu:107484182 439.113