Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g0974 | ATGGCGGTATTATCGGAGATAAACGACGGCGACGAGGAGAAAGAGCTGGACGAGGAGCCCGGCGAGGTGATCGAATCGGCGCCGCCGCAGAAGGTCGGCGAAGAGAGGGAACTCGGTAACTATGGACTGAAGAAGAAGCTCATCAAGCGCGGAATCGGTTGGGAAACTCCTGAGCTCAACGATGAAGTCACTGTGCACTATGTTGGGACTTTGGAAGATGGAACCAAGTTTGATTCCAGTAGGGATAAAGATCAACCTATAAAGTTCACTCTTGGTCAAGGTGAACTGGCTGCTGGATTGGATCATGGAATAATCACCATGAAGAAGGGGGAGGTAGCTTTGTTCACAATACCTGATGAGMCGGGTGTTTCATCGGCCAACTCCAAGCAGTTTGAGGTGGAGCTCATTTCGTGGATCAAAGTGGTGGATGTTTGCAGAGATGGTGGGATTATCAAGAAAATTATGGAGAAGGGGGTTGGGGATGAGCGACCCCGTGATCCAGATGAAGTCCTTGTGAAGTATCGGATGGCACTAGCTGATGATACTATTGTTGCTGAAACACCAGAAGGAGGAGTTGAATTTCATGTTAAGGATGGTCATCTTCTTCCGGGATTGCCAAGAGTAATCATGACTATGACAAAGGGAGAGAAGGCTCAATTAATTGTTCAACCCCACTATGCTTTTGGAGAGAAGGGGAGTGAAGCTAGCAATGGAGTACATTCTGTTCCACCAAATTCAGTGCTGCATGTTAATATTGAATTGGTTTCTTTCAAGCCTGTCATAGATGTTACTGGTGACTCCAAGGTGCTTAAGAAAATTTTGAAAGAAGGAGAGGGTGCTTCCACAGCAAATGAGGGTGCAAATGTTACAGTCAGTTACACAGCAAAGCTAGAAGATGGAACTGTATTTGAGAAAAGAGGAATCGATGAAACTCCTCCTTTGGAATTTATAACTGATGAAGAACAAGTGATTGTTGGTCTAGATCGAGCAGTGGTAACTATGAAGAAGGGTGAGAGAGCCATAATTAGCATACATCCTGATTATGCATTTGGAGATGTTGAAGTAAAACGGGACTTCGCCATGGTTCCACCAAGCTCACGTGTAGTCTATGATGTTGAAATGAAAAATTTCATTAAGGAGAAAGCACCATGGGAATTGAAAAGTAACGAGAAAATTGATACAGCTAAAAGGAAGAAAGAAGAAGGCAATATGCTATTTAAATGTTGCAAGTATGAGCGGGCAGCCAAGAAGTATGATAAGGCTGCTGATTATGTTAGTGAAGATGGATCGTTTGGGGATGATGAGGAAAAACAAGCTAAAGCACTAAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTTGCCTTAAACTTAACGACTTTCCTGGAGCAATCAAGTTATGTTCACAGGTGCTTGATGTTGAGATTTGCAACGTAAAAGCTTTATACAGACGAGCGCAAGCATATATAGAGACTGGAGATTTTCTGTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGACCCACAAAATAGGGAGGTAATGGTAATGAAGAAGAAATTAAAGCAACTTCAGGCTGAGAATGATAAGAAATATGCTAAGCTCTATGAAAATATGTTTGCGCATAAAGAAAAGGARTCATCTGTGGCAACAAAGAGATTGAAGGTTGAAAAACAAGAGGACGAGAAGAAAAATGAAGAGGCCACGAAGATGGAAATGGACAAAGTTGCGGATAGTGCTGCTCCTTCTGTCGACGGTCTAATTGTGGATTCATAA | 1776 | 0.4302 | MAVLSEINDGDEEKELDEEPGEVIESAPPQKVGEERELGNYGLKKKLIKRGIGWETPELNDEVTVHYVGTLEDGTKFDSSRDKDQPIKFTLGQGELAAGLDHGIITMKKGEVALFTIPDEXGVSSANSKQFEVELISWIKVVDVCRDGGIIKKIMEKGVGDERPRDPDEVLVKYRMALADDTIVAETPEGGVEFHVKDGHLLPGLPRVIMTMTKGEKAQLIVQPHYAFGEKGSEASNGVHSVPPNSVLHVNIELVSFKPVIDVTGDSKVLKKILKEGEGASTANEGANVTVSYTAKLEDGTVFEKRGIDETPPLEFITDEEQVIVGLDRAVVTMKKGERAIISIHPDYAFGDVEVKRDFAMVPPSSRVVYDVEMKNFIKEKAPWELKSNEKIDTAKRKKEEGNMLFKCCKYERAAKKYDKAADYVSEDGSFGDDEEKQAKALRVSCWLNGAACCLKLNDFPGAIKLCSQVLDVEICNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVMVMKKKLKQLQAENDKKYAKLYENMFAHKEKESSVATKRLKVEKQEDEKKNEEATKMEMDKVADSAAPSVDGLIVDS* | 592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g0974 | 591 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 7 | 262 | - | - | |
| Amo06g0974 | 591 | SUPERFAMILY | FKBP-like | 39 | 152 | - | - | |
| Amo06g0974 | 591 | SUPERFAMILY | TPR-like | 390 | 542 | IPR011990 | GO:0005515 | |
| Amo06g0974 | 591 | SUPERFAMILY | FKBP-like | 146 | 259 | - | - | |
| Amo06g0974 | 591 | Gene3D | - | 36 | 141 | IPR046357 | GO:0003755 | |
| Amo06g0974 | 591 | Gene3D | - | 142 | 257 | IPR046357 | GO:0003755 | |
| Amo06g0974 | 591 | MobiDBLite | consensus disorder prediction | 551 | 574 | - | - | |
| Amo06g0974 | 591 | MobiDBLite | consensus disorder prediction | 551 | 591 | - | - | |
| Amo06g0974 | 591 | Gene3D | Tetratricopeptide repeat domain | 383 | 538 | IPR011990 | GO:0005515 | |
| Amo06g0974 | 591 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 260 | 374 | - | - | |
| Amo06g0974 | 591 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 375 | 563 | - | - | |
| Amo06g0974 | 591 | Coils | Coil | 549 | 576 | - | - | |
| Amo06g0974 | 591 | Coils | Coil | 514 | 534 | - | - | |
| Amo06g0974 | 591 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Amo06g0974 | 591 | ProSiteProfiles | TPR repeat profile. | 478 | 511 | IPR019734 | GO:0005515 | |
| Amo06g0974 | 591 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 60 | 258 | IPR001179 | GO:0003755 | |
| Amo06g0974 | 591 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 260 | 374 | - | - | |
| Amo06g0974 | 591 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 286 | 378 | IPR001179 | GO:0003755 | |
| Amo06g0974 | 591 | Gene3D | - | 258 | 382 | IPR046357 | GO:0003755 | |
| Amo06g0974 | 591 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 375 | 563 | - | - | |
| Amo06g0974 | 591 | SMART | tpr_5 | 395 | 428 | IPR019734 | GO:0005515 | |
| Amo06g0974 | 591 | SMART | tpr_5 | 444 | 477 | IPR019734 | GO:0005515 | |
| Amo06g0974 | 591 | SMART | tpr_5 | 478 | 511 | IPR019734 | GO:0005515 | |
| Amo06g0974 | 591 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 161 | 255 | IPR001179 | GO:0003755 | |
| Amo06g0974 | 591 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 280 | 374 | IPR001179 | GO:0003755 | |
| Amo06g0974 | 591 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 55 | 130 | IPR001179 | GO:0003755 | |
| Amo06g0974 | 591 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 7 | 262 | - | - | |
| Amo06g0974 | 591 | SUPERFAMILY | FKBP-like | 263 | 394 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo06g0974 | Amo-Chr6 | 13355406 | 13361667 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo06g0974 | 31 | 541 | Calmodulin-binding Proteins | AT3G25230 | 55.470 | 0.0 | 551 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo06g0974 | K09571 | - | gmx:100798382 | 838.565 |