Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0963 ATGAGCTGCTTCTCTTGCCTTGTTGATGATGATCACCACGGGAAGCATGGGCCCGGGGAGATGAACAGAATGGAATTATTAATTGAGAACTACTTTAAGAAGAATAATACAGGGAGAGGGCGGAAGAAGAAGAAGCAGGATCGGGGTGAAAGCAAGACAGACGCTGCCATCAGCTTTGGTTTTCGGGAGCTTGAATGGGCAACCGACACTTTCAAGGAAGCCAACTTGATTGGGGAAGGCGGTTTTGGAAGGGTTTACAAGGGTCGTCTCTTGACAGGCCAGGCATGCATCCATGTGGTTGCTGTAAAACAATTAAATCATGACGGGCATCAAGGTTTTCAAGAATTTGTGACAGAGGTGCTTATGCTTAGCCTCCTCCACCATTCTAATCTCGTTAACTTGATTGGCTATTGCACCGATGGTGAGCAGAGGCTGTTGGTGTATGAATATATGCCCATGGGTAGCCTTGAAGATCATCTTTTTGCAGCAGATCCTACATTGAATAATAATAAGGAAGGAGGGCTAAGTTGGATAACTCGAATGAAAATCGCGGCCGGGGCTGCTCGTGGGCTGGAGTATCTCCATTGCAAAGCAAATCCACCTGTTATCTATCGCGACTTGAAATCGGCGAATATCTTATTAGACAATGATTTCAACCCAAAACTCTCAGATTTTGGGCTCGCCAAGCTAGGGCCTGTTGGAGACAACACCCATGTTTCCACCAGAGTCATGGGAACGTACGGCTACTGCGCCCCCGAATATGCCATGAGTGGAAAATTAACTCTTAAATCCGATATTTACAGCTTTGGTGTTGTCTTGCTCGAGTTGATCACTGGTCGTAAGGCCATGGATTTCACTAGAAAACAAGGCAGCCAAAACTTAGTTTCATGGGCTCGTGCTTTCTTAAGTGACAGGAAAAAGTTTAGGCAAATGGTTGACCCTCGATTGCGGGGAAGCTATCCTGTGCGTTGCATGCATCATGCGATTTGTATAACCGCAATGTGTCTGCAGGACCAACCAATTTTTCGTCCACATGTTCGTGATATTGTTGCTGCACTAGATTACATAGTTTCTCAGAGTATTCTTGAACTCGATAAGCATGGAAGACTGTCTGACACCAACTCATCACAACAAGAACCACAACCGCAAATTGCCACAAGTTAA 1164 0.4553 MSCFSCLVDDDHHGKHGPGEMNRMELLIENYFKKNNTGRGRKKKKQDRGESKTDAAISFGFRELEWATDTFKEANLIGEGGFGRVYKGRLLTGQACIHVVAVKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVNLIGYCTDGEQRLLVYEYMPMGSLEDHLFAADPTLNNNKEGGLSWITRMKIAAGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDFTRKQGSQNLVSWARAFLSDRKKFRQMVDPRLRGSYPVRCMHHAICITAMCLQDQPIFRPHVRDIVAALDYIVSQSILELDKHGRLSDTNSSQQEPQPQIATS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0963 387 Gene3D Transferase(Phosphotransferase) domain 1 151 375 - -
Amo06g0963 387 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Amo06g0963 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Amo06g0963 387 ProSitePatterns Protein kinases ATP-binding region signature. 77 103 IPR017441 GO:0005524
Amo06g0963 387 PANTHER OS07G0668900 PROTEIN 40 363 - -
Amo06g0963 387 Coils Coil 385 387 - -
Amo06g0963 387 CDD STKc_IRAK 77 354 - -
Amo06g0963 387 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Amo06g0963 387 SUPERFAMILY Protein kinase-like (PK-like) 60 359 IPR011009 -
Amo06g0963 387 SMART serkin_6 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0963 387 PANTHER OS07G0668900 PROTEIN 40 363 - -
Amo06g0963 387 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0963 387 PIRSF ILK 28 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0963 Amo-Chr6 13235416 13236828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0963 1 356 Glycoside Hydrolase AT3G07070 53.351 1.37e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo06g0963 PK_Tyr_Ser-Thr 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0963 - - ahf:112805431 721.465