Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0954 ATGGCAAGTCAGGGCTCTAATGAAGGCTCTAGTTCCGGCATTACATCGGCTGAGTGTTCGGATTCAACTGTTCAACTCAACATCAAGACTCTAGATTCACGTGTCTATAATTTTCAACTGGACAAAAATATGCCTGTTTCGTTGTTAAAGGAGAAAATTGCAAATGAAATTGGTCTTCCAGTTGGTCAGCAACGGCTGATTTTTAGAGGAAAAGTCTTAAAGGACGAGCATGTGCTATCTGAGTATCATATCGAGAATGGGCATACCTTGCATCTAGTTGAAAGGCAACCAAATCAGTCACAGGCTTCTGGTAATAGTACTGCTGAGCCAGCTGGTGCTAATGGTAATGCAGGAAATGATGCAGCCTCCGTGCCTCCTCGTAACCGTGTTGGACAAATTTCACACAGTGTTGTTCTTGGAACTTTTAATGTGGGGGACCAAGGGGAAGGCATTGTTCCTGACCTTACACGGGTTATTGGGGCAGTTTTGAATTCTATTGGAATTGGTGGTCAGAACACAAGTAGTCCTCCCAATGCTACCCAACCTGCTACAGCTCCGCTAGGGAATGAAGCTGCGGGCGTGAATTCTGGGAATCAAAATGCATCTGGAAATCAAGCACAGTCTGGCCAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCATGTTGTTCAAATTCCTGTGGCTTCTGGGGCCATACCAATCCCTTCTCTCAATGCTCCAATTCCTGATTCATTGAACACACTCTCTGAATTTATAAATCGCATGGAACAGACACTATTGCTAAATGTTTATCAGTCAAATTTATCTTCAACTAATGCTGGAGATCAACGGGTTGAATTGCCTACCAATGCACAAGGGTTGCCGACAGTTGAAGCATTAAGCACCATCTTGCATCGTACAGAACAGTTGCTTAGTCATCAAGCTGTTGCTGCGATATCTCATATTGCTGGACGGTTGGAGCGAGAGGGAACTTCGTCTGATTTAAGTATAAGGGATCAAATACAGTCAGAGTCAGCACAATTAGGACTTGCTATGCAGCATTTGGGCACACTTTTACTTGAGCTTGGCCGAACAATCTTAACCCTGCGCATGGGACAGTCTCCTGCAGAATCTGCTGTAAATGCTGGACCTGCAGTTTATATTTCTCCATCAGGGCCAAATCCTGTAATGGTTCAGCCCTTTCCTCTTCAGACAAACTCACTATTTGGTGGTCCTATTCCTTCTTCAACTCCTCCAGCATTTGGTGCCATTGGTATTGGAAGTGCTCCGCGGAATGTGAACATTCATATACATGCTGGTACTGCTCTTGCTCCCATTGTTTCAGCAATTAGTTCTAGGACAAATAATGGAGAAGGGACAAGAAATGAAAACCGTAATGAGCCTGGCCCTGGGGATTCAGGTTCTGCACGTGCGTTGCCCGTTAGAAATTTCATGTCGGCAGCCTTCCCATCTCACCCTCCTGGTGTTGGAGTTGCCAGTGGCACACAGACTGGGTTAGGTGTTTCTACTTCACAGCCACCACCTAATTCAACTCCATGGTCATCTGCTGCAAATGAAGCGAATTTCTTTAGGAACTTAGTTCGTAATATACAAGGAGATAACACAGCTCCATCAGGTCAGATGGCATCAACTGGCCGAGACTTGTCTTCTGGTTCTGAATCAAGGTCTTCCCAGAGAGATGAGCAGGCAGATACCACCGGGATGAATGGCTTCAGAACTGCAACTGCATCCTCAGTTGGCTGTGGCTCTCTCCAAACTGAGGTAGTGCAAACCTGTGATAATGATGAGAGAGGTGTTTCAGTTGACAATTACCCTTCAAGTTCTTCCGGTCAAGGTTTACAAAGCTCTTCTGGTGGAGAAACAACAGTGAAATCAGAACAAGTAAAGGATGCTCCATCTGCAAGTGCGAAACAGGGTGTAGCTGAACCTGCCAGAGCTGCTCCTCTTGGATTGGGCATGGGTGGCTTAGAGCGTAAGAGGCGGACAGGACTTCAACCTCCTGTAAGTAAAGGCGCTGACATATCATCCGGTTCTTCTGTCAACCAAAGTCAGCAAACTGGAACAGAGGGTCAACACACATTACAAGCACTTCCAAGTCATGGCTCTTCTGTGAATGCAAGAAATCCTAATAGACCATCCCAGCAGCCGCTGCCCTCTAGTAATAGGCAGATTGATATGGCTGGTTTGATGTCTCAGGTTTTGCATAGCCCTGCTTTGAATGGTTTGCTTGAAGGGGTTTCACAGCAAACTGGGGTTGACTCACCTAATGGCTTGAGGAATATGTTGCAGCAGTTCACGCAGAGCCCACAGATGATGAACACAGTCAATCAAATTGTCCAACAGGTTGGCAGTCAGGATATGGGAAATATGTTTGCCGGGATGGAAAGGGGGCAAGGGGGTGGCATTGATTTTTCGACGATTCTTCAACAGATGATGCCTATTGGATCCCGAGCGGCTGGTGGGGATACTCCTCCTCCACTATTCTCTGCTGCAGAACCTGAGACCTTGGCACCTTGCAGAGATGAAAACTCCAATAATACAACTTTACAGCTCAACCTTCAAGAAGTGGTGGATAGGATTGATCACTTGAGCCCACCAACAGATGTTTTTCGTGCTGTGGCTGAAAATGCCGTCCTGGTATCTGGGGGTGTAAATGTTACCGATGATATTCTGGATGAGTTATGCAGTAATGAGAGTCTTGCCAGCGAATATTTGGAGACGTTGCGATATGATGTGAGACAGCGGCTAGATGGACATTCTGAGCAGGACAAGTCGTAA 2781 0.4624 MASQGSNEGSSSGITSAECSDSTVQLNIKTLDSRVYNFQLDKNMPVSLLKEKIANEIGLPVGQQRLIFRGKVLKDEHVLSEYHIENGHTLHLVERQPNQSQASGNSTAEPAGANGNAGNDAASVPPRNRVGQISHSVVLGTFNVGDQGEGIVPDLTRVIGAVLNSIGIGGQNTSSPPNATQPATAPLGNEAAGVNSGNQNASGNQAQSGQTFPGQAFQSLPHVVQIPVASGAIPIPSLNAPIPDSLNTLSEFINRMEQTLLLNVYQSNLSSTNAGDQRVELPTNAQGLPTVEALSTILHRTEQLLSHQAVAAISHIAGRLEREGTSSDLSIRDQIQSESAQLGLAMQHLGTLLLELGRTILTLRMGQSPAESAVNAGPAVYISPSGPNPVMVQPFPLQTNSLFGGPIPSSTPPAFGAIGIGSAPRNVNIHIHAGTALAPIVSAISSRTNNGEGTRNENRNEPGPGDSGSARALPVRNFMSAAFPSHPPGVGVASGTQTGLGVSTSQPPPNSTPWSSAANEANFFRNLVRNIQGDNTAPSGQMASTGRDLSSGSESRSSQRDEQADTTGMNGFRTATASSVGCGSLQTEVVQTCDNDERGVSVDNYPSSSSGQGLQSSSGGETTVKSEQVKDAPSASAKQGVAEPARAAPLGLGMGGLERKRRTGLQPPVSKGADISSGSSVNQSQQTGTEGQHTLQALPSHGSSVNARNPNRPSQQPLPSSNRQIDMAGLMSQVLHSPALNGLLEGVSQQTGVDSPNGLRNMLQQFTQSPQMMNTVNQIVQQVGSQDMGNMFAGMERGQGGGIDFSTILQQMMPIGSRAAGGDTPPPLFSAAEPETLAPCRDENSNNTTLQLNLQEVVDRIDHLSPPTDVFRAVAENAVLVSGGVNVTDDILDELCSNESLASEYLETLRYDVRQRLDGHSEQDKS* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0954 926 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 924 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 670 722 - -
Amo06g0954 926 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Amo06g0954 926 MobiDBLite consensus disorder prediction 169 213 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 597 722 - -
Amo06g0954 926 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Amo06g0954 926 CDD Ubl_ubiquitin_like 26 93 - -
Amo06g0954 926 Gene3D - 14 108 - -
Amo06g0954 926 SUPERFAMILY Ubiquitin-like 13 98 IPR029071 -
Amo06g0954 926 MobiDBLite consensus disorder prediction 532 572 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 597 633 - -
Amo06g0954 926 PRINTS Ubiquitin signature 55 75 IPR019956 -
Amo06g0954 926 PRINTS Ubiquitin signature 76 97 IPR019956 -
Amo06g0954 926 MobiDBLite consensus disorder prediction 96 113 - -
Amo06g0954 926 PANTHER OS07G0498800 PROTEIN 6 924 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 532 553 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 96 128 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 496 517 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 447 463 - -
Amo06g0954 926 MobiDBLite consensus disorder prediction 447 517 - -
Amo06g0954 926 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0954 Amo-Chr6 13052134 13060003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0954 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.76e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0954 - - gmx:100783611 1269.22