Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0939 ATGCTCAACTTCGTTGTATTAGGGGCATTTATGGGAGAAACTTCGCATAAAGTTTGCCGTGTTGAAAGAATTTCAGAAGGCACAATGACTTGCGGCAGAGAGGGAAACAACTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGGTGACTAGTCAACCATTAGTGGAATCTTACAGGGAAGACTGTGTTTATTTGTGTGGCTTAATGGTTATCTATACACCTAATAAAGCAGATGCTAATTTTGGTAAGACTTCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCCTTCAATGAGACTATCGTTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGCGTGTGCATAAACAGGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCTCATGCAGAAACTGCACAAGCAAGATCCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGGTTGCATGACATGCTTGCTTTTGGTGATATTTGGAATTGTGCTTCTAATCGTCATCGTTGTTCTGGCTGCTTAGTCAAAGATTATCAGTTCTATTAA 645 0.3984 MLNFVVLGAFMGETSHKVCRVERISEGTMTCGREGNNLHPICSTSSSIQVTSQPLVESYREDCVYLCGLMVIYTPNKADANFGKTSEQRALLVESRRQEVLFLDNEIAFNETIVEEREQGIQEIQQQIGEVNEIFKDLAVRVHKQGAMIDDIGSNIEHSHAETAQARSNLLKLQRLKDQILLWLHDMLAFGDIWNCASNRHRCSGCLVKDYQFY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0939 214 PANTHER SYNTAXIN 71 174 IPR045242 -
Amo06g0939 214 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 111 173 IPR000727 -
Amo06g0939 214 SMART tSNARE_6 106 173 IPR000727 -
Amo06g0939 214 PANTHER SYNTAXIN OF PLANTS PROTEIN 71 174 - -
Amo06g0939 214 SUPERFAMILY t-snare proteins 97 166 IPR010989 GO:0016020|GO:0016192
Amo06g0939 214 ProSitePatterns Syntaxin / epimorphin family signature. 117 156 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo06g0939 214 Gene3D - 112 172 - -
Amo06g0939 214 CDD SNARE_Qa 131 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0939 Amo-Chr6 12918091 12920380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0939 64 172 SNARE and Associated Proteins AT5G46860 60.550 6.28e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0939 - K08488 gsj:114425559 138.658