Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0923 ATGCTGGACTCAGTTCTGCTGGCGCTGTTCCTGCCGTGCCTGGGCATGAGCGCCGTCTTCATAGTGTACATCTGCCTTCTCTGGTACGCCACCGCACACCACCCCAACCTCCCTCCGCCCCCAGCCAAAACCCTCTCCGTGAAGGGCCTCTCCCCCTCCGACCTTGACAAGCTCCCCAAGGTTACCGGCAAGGACCTGCTGTCCCCTAGCGAATGTGCAGTGTGCCTCGATGACATCGCCCATGAACAAGCTGTTCGGATGGTTCCCGGTTGCAACCATGGCTTTCACCTTGAATGCGCGGATACCTGGCTTTCAGAACACCCTCTGTGTCCGGTTTGTAGAGCCAAACTGGACCTTGAGAATTTGAATTCCTCTGAAAGTGAAAAGAATCCATGCTAA 399 0.5614 MLDSVLLALFLPCLGMSAVFIVYICLLWYATAHHPNLPPPPAKTLSVKGLSPSDLDKLPKVTGKDLLSPSECAVCLDDIAHEQAVRMVPGCNHGFHLECADTWLSEHPLCPVCRAKLDLENLNSSESEKNPC* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0923 132 Pfam Ring finger domain 71 114 IPR001841 -
Amo06g0923 132 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Amo06g0923 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Amo06g0923 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 132 - -
Amo06g0923 132 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 132 - -
Amo06g0923 132 SMART ring_2 72 113 IPR001841 -
Amo06g0923 132 SUPERFAMILY RING/U-box 63 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0923 Amo-Chr6 12753987 12755349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0923 1 132 C3H Transcription Factor Family AT5G42200 48.905 1.43e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0923 K19037 - gmx:100817919 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0923 06 12753987 12755349 Amo08g0224 08 3684634 3686807 PCT
Amo06g0923 06 12753987 12755349 Amo17g2099 17 108725154 108726993 PCT
Amo08g0224 08 3684634 3686807 Amo06g0923 06 12753987 12755349 PCT
Amo17g2099 17 108725154 108726993 Amo06g0923 06 12753987 12755349 PCT