Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0921 ATGGTTAACACAACGGAATCTTCCTCTAACCACCACTCCCCGCCGATGACGGCGGTCCCCCCTGAATCCGACAGCCCTAAGTTCCCGCGAAAAAATCTCCCTTCTCCATGGGCTCAGGTTGTCCGCGGCGCCGAGCCTGAATCCACTGCCGGGACTCCCCAATCGCCGCCGCCACCGCCACCATCGTCTGCCTCCTCCTCCTCCTCCCTTGCTGCCAGCGTCGCGTCAGTCCCGGAGCAGCTGCCTTCTTCAGATTCCTCCTCCCCAAAGGCCGTAGCTGCCTCGCCGCTGGTGGACAACAGGAGTGTTGTGGCAGCTCCTCCCGATAGCTCCGATGGCGGTGAGGGCAATGCGGGTAGGTCCAAGAAACCCGCGTGGAATAAACCTTCAAACGGGGTCGTATCTGAGGCCGGTCTTGTGATGGGAGGGTCATGGCCTGCTCTGTCTGAATCTACCAAAGGGACTCCCAAATTGGCGGCTGAACCATCTTCCAAGACTGCCTTAGATGCATCGCTCTCCACATCTCAGGGTCCTGTAACTTCGAACGCTCCCCAAAGACAAGCTACTAGCCATGCAAAACCCAACTCTGCAACAACTTATAACATACCTAATAGGCAAAGACCAATGAAGCGTGGAGGTGGCAGCAACATTGGGTCTGGTCCTTCTTCAAGCGGCTTTCCCAATGTTGCGCCACCTCCACCACCCTTTCCTGTATACCCAGTTCCTGCACCAGCAATTGGTTACAGTAATGTCATGCCGGGAGCTCCAGACCATTCTCCAAGAGATCATTATCGTCGTAATACCTGGGATGCAAGACCACCTGTTGGGAATTTTGTGCCTCCGATGACTGAACATCGGGGTTCATCTGAACATCGGGGTTCATCTCGCCGGGGTAATTTTGGGTCCCATCCTAGGGGAGATGGCTCCTATCATAATAATTATGGTAGTAGGCGTGATCATGATCGTGCCAATTATGGGAATGCTAGAGATGCTCATGTACACCAACCAGGGGGAATATTGAGGCACCCACCACCGAATGCTCCTTCATTTGTTAACCCCGCACATGTTGGATCCTCACCCTATGCTAACCACATGGGCTTCCATGGTCCGGACTTATTATATGTTTCACCAGTACAAGTAGATCCCATGAGGGGCATGCCATTCTTTCCTTCCACTCCTCTTCCTCCTTCTCCTCCTCCTCCTCCTCCTACGATGTTCTTCCATGCAGAAACTTCTTCTCCTCTTAACAATATGATTATCAAGCAAATTGAATACTACTTTAGTGATGCTAATTTAGTAAAAGATGAATATTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCCATTACGTTGATAGCAAACTTTCCTCGRGTAAGTTGA 1383 0.5177 MVNTTESSSNHHSPPMTAVPPESDSPKFPRKNLPSPWAQVVRGAEPESTAGTPQSPPPPPPSSASSSSSLAASVASVPEQLPSSDSSSPKAVAASPLVDNRSVVAAPPDSSDGGEGNAGRSKKPAWNKPSNGVVSEAGLVMGGSWPALSESTKGTPKLAAEPSSKTALDASLSTSQGPVTSNAPQRQATSHAKPNSATTYNIPNRQRPMKRGGGSNIGSGPSSSGFPNVAPPPPPFPVYPVPAPAIGYSNVMPGAPDHSPRDHYRRNTWDARPPVGNFVPPMTEHRGSSEHRGSSRRGNFGSHPRGDGSYHNNYGSRRDHDRANYGNARDAHVHQPGGILRHPPPNAPSFVNPAHVGSSPYANHMGFHGPDLLYVSPVQVDPMRGMPFFPSTPLPPSPPPPPPTMFFHAETSSPLNNMIIKQIEYYFSDANLVKDEYLRSNMDEQGWVPITLIANFPRVS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0921 460 SUPERFAMILY "Winged helix" DNA-binding domain 407 459 IPR036390 -
Amo06g0921 460 SMART la 413 460 IPR006630 -
Amo06g0921 460 MobiDBLite consensus disorder prediction 1 16 - -
Amo06g0921 460 MobiDBLite consensus disorder prediction 226 242 - -
Amo06g0921 460 ProSiteProfiles La-type HTH domain profile. 409 460 IPR006630 -
Amo06g0921 460 PANTHER LUPUS LA PROTEIN-RELATED 48 460 IPR045180 -
Amo06g0921 460 Gene3D - 407 460 IPR036388 -
Amo06g0921 460 CDD LAM 417 459 - -
Amo06g0921 460 Pfam La domain 419 459 IPR006630 -
Amo06g0921 460 PANTHER LA-RELATED PROTEIN 1B 48 460 - -
Amo06g0921 460 MobiDBLite consensus disorder prediction 65 93 - -
Amo06g0921 460 MobiDBLite consensus disorder prediction 1 354 - -
Amo06g0921 460 MobiDBLite consensus disorder prediction 312 328 - -
Amo06g0921 460 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0921 Amo-Chr6 12676775 12680277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0921 K18757 - gmx:100785504 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0921 06 12676775 12680277 Amo08g0216 08 3598269 3600870 PCT
Amo06g0921 06 12676775 12680277 Amo17g2105 17 108949516 108952097 PCT
Amo08g0216 08 3598269 3600870 Amo06g0921 06 12676775 12680277 PCT
Amo17g2105 17 108949516 108952097 Amo06g0921 06 12676775 12680277 PCT