Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0917 CCAGAAACTAGACGCCTTCCTCCTCATGCTTTTTTCTTACCCCTTCGCTTCATACACCTCTGCCAATTTCACTCCCGGAGCCTCCCCTCGTCTCCACGCGCTTCTTCTCCTCCTTTCACCACCATCGACATTTTTCTTCCGCCTCTTCGCCACCGTGTCCAACATCGTCTTGCTCTTGAAGATCTATACCACTTGATCAAGAAGGCTGTCTCAATCAAGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAAGTTGATTTTGGTAGAGAGCAGGATTTACCGCCTTGCACGTTACTACAAGAAGACCAATAAGCTTCCACCCGATTCGACGCTTATTGTGTCAACACTTCTACCTGTAGTTTCTATAAATAATGACAGCAAAGATCAATTAGATTTCTCAATTGGACTTAAGATGTATAATGAGGTGCAACGTTGCTTTTTCACAATTGGTTTGGTGTATCCAGATGATTTGTTTCTGTTTCTTGTAAAAGTAAGTTGTTAA 513 0.4308 PETRRLPPHAFFLPLRFIHLCQFHSRSLPSSPRASSPPFTTIDIFLPPLRHRVQHRLALEDLYHLIKKAVSIKKHLERNRKDKDSKFKLILVESRIYRLARYYKKTNKLPPDSTLIVSTLLPVVSINNDSKDQLDFSIGLKMYNEVQRCFFTIGLVYPDDLFLFLVKVSC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0917 170 PANTHER 40S RIBOSOMAL PROTEIN S13 60 112 - -
Amo06g0917 170 ProSitePatterns Ribosomal protein S15 signature. 72 102 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo06g0917 170 PANTHER RIBOSOMAL PROTEIN S15P/S13E 60 112 IPR023029 -
Amo06g0917 170 SMART Ribosomal_S15_2 50 123 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo06g0917 170 CDD Ribosomal_S15p_S13e 60 115 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo06g0917 170 Pfam Ribosomal protein S15 60 107 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo06g0917 170 SUPERFAMILY S15/NS1 RNA-binding domain 60 113 IPR009068 -
Amo06g0917 170 Gene3D - 59 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0917 Amo-Chr6 12638469 12639864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0917 60 111 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.385 2.40e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0917 K02953 - aip:107630757 156.377