Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0894 ATGGATGATGCTGGGCACCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTAGCCCCGGACAGTGGTTGATGCAACATCAGCCTTCTATGAAACAAATTATGGCTCTTATGGCTGAAAGGGATGCACTTATTCAAGAAAGAAACCTGGCTCTTTCTGAGAAGAAGGCAGCACTTGCAGAGCGCGACATGGCATTCCTGCAGCGGGATGCTGCAATCACAGAACGAAATAATGCTTTAATTGAACGAGACAATGCAATTGCTGCACTTCAATATCGTGAAAATTCCCTAACCAACAGCAGTATGCCGTCCTCATGCCCTCCTGGATGCCAAATCTCACGGGGTATCAAACATATGCATCATCCACAGCAACAAGTACACCACATGCCTAATAATATGGGTGACGGTTCTTACACTGCAAGGGAAATGCACACAAGTGATTCCCTCCCAACTGTGCCCATTCCTTCAGAGGCTGGGAAGTCCCGGCGAGGTAAACGACCAAAGGAGCCTAAGTCAGTTTCACCAAATAAGAAGGCTTCAAAAGGTACTAGAAAGGTGAAGAGGGATGACGAAGATACTCACAAGATGATGTTTGGCAAGGCTAATGAATGGAAGAGTAGTCAGGAAATGATTAATGGGAGCGAAGACCTTAACAAGCAGTTAGAGGTGACAAAGGCCGATTGGAAATCCCAGGACTTGGCATTGAACCAAGTTGCGTACGATGAGTCGACAATGCCAGCTCCCGGGTGTTCTTGTACTGGTGTTCTGAGGCAGTGTTACAAATGGGGAAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCCTTTCAGTGTATCCCCTTCCAGCAGTTCCTAACAAGAGGCATGCTCGGATAGGTGGCCGGAAAATGAGTGGAAGTGCTTTCAGTAAGCTGCTTAGTCGGCTTGCTACTGAGGGTCATGATCTGTCAAACCCAGTTGACCTCAAGGACCATTGGGCCAAACATGGTACAAATCGGTATATCACGATAAAGTAG 1020 0.4686 MDDAGHRENGRHKADQYKSSPGQWLMQHQPSMKQIMALMAERDALIQERNLALSEKKAALAERDMAFLQRDAAITERNNALIERDNAIAALQYRENSLTNSSMPSSCPPGCQISRGIKHMHHPQQQVHHMPNNMGDGSYTAREMHTSDSLPTVPIPSEAGKSRRGKRPKEPKSVSPNKKASKGTRKVKRDDEDTHKMMFGKANEWKSSQEMINGSEDLNKQLEVTKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLATEGHDLSNPVDLKDHWAKHGTNRYITIK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0894 339 SMART GAGA_bind_2 1 339 IPR010409 -
Amo06g0894 339 MobiDBLite consensus disorder prediction 126 153 - -
Amo06g0894 339 MobiDBLite consensus disorder prediction 120 195 - -
Amo06g0894 339 MobiDBLite consensus disorder prediction 160 176 - -
Amo06g0894 339 MobiDBLite consensus disorder prediction 1 15 - -
Amo06g0894 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 209 - -
Amo06g0894 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 214 339 - -
Amo06g0894 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Amo06g0894 339 MobiDBLite consensus disorder prediction 1 22 - -
Amo06g0894 339 Coils Coil 51 78 - -
Amo06g0894 339 PANTHER - 1 209 IPR010409 -
Amo06g0894 339 PANTHER - 214 339 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0894 Amo-Chr6 12228502 12229663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0894 65 339 BBR or BPC Transcription factor family AT5G42520 61.246 3.71e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Amo06g0894 GAGA_bind 2.5e-105 No_clan