Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0880 ATGGAGATTATAGAAGAAGCACCAATGAAATCATCAACAAGGTTCAAGCGTATCTGTGTGTTCTGTGGCACAAGCCCTGGCAAGAACCCAAGCTACCAAATTGCTGCTATCCAACTTGGAAAACAATTGGTGGAGAGGAATATAGACTTGGTATATGGAGGAGGAAGCATAGGGTTAATGGGTCTCATCTCACAAGTTGTCTTTGATGGTGGACGCCACGTGTTAGGGGTTATCCCTAAGACTCTAATGCCGAGAGAGATCACAGGAGAGACTGTGGGAGAAGTGAGGGCAGTTTCGGGAATGCACCAACGTAAGGCTGAAATGGCTCGACAAGCTGATGCATTTATTGCTTTGCCAGGTGGTTATGGAACCTTGGAAGAACTGTTGGAGGTCATCACCTGGGCTCAATTAGGAATTCATGATAAACCTGTAGGGTTGTTGAACGTGGATGGATACTATAACTCATTGTTGTCATTCATGGACAAAGCTGTTGATGAAGGTTTCATAACACCAGCTGCCCGTCACATTATTGTGGCTGCCCAAACTGCCCAAGAACTTATGTGTAAGCTTGAAGAATACGTTCCAAAGCACTGTGGCGTGGCCCCAAAGCAAAGCTGGGAGATGGACCAACACTTACTAAATACTTAA 648 0.4537 MEIIEEAPMKSSTRFKRICVFCGTSPGKNPSYQIAAIQLGKQLVERNIDLVYGGGSIGLMGLISQVVFDGGRHVLGVIPKTLMPREITGETVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFMDKAVDEGFITPAARHIIVAAQTAQELMCKLEEYVPKHCGVAPKQSWEMDQHLLNT* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0880 215 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 9 210 - -
Amo06g0880 215 PANTHER LOG FAMILY PROTEIN YJL055W 9 210 - -
Amo06g0880 215 SUPERFAMILY MCP/YpsA-like 14 193 - -
Amo06g0880 215 Pfam Possible lysine decarboxylase 60 189 IPR031100 -
Amo06g0880 215 Gene3D - 4 192 - -
Amo06g0880 215 TIGRFAM TIGR00730: TIGR00730 family protein 16 193 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0880 Amo-Chr6 12011858 12015748 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0880 K22522 - gmx:100814612 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3992 16 151936215 151943869 Amo06g0880 06 12011858 12015748 hybridization
Amo06g0880 06 12011858 12015748 Amo08g0183 08 3150158 3152438 PCT
Amo06g0880 06 12011858 12015748 Amo17g2154 17 111083072 111085268 PCT
Amo08g0183 08 3150158 3152438 Amo06g0880 06 12011858 12015748 PCT
Amo17g2154 17 111083072 111085268 Amo06g0880 06 12011858 12015748 PCT