Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0860 ATGAAAGTCTACAATACTGATGAAAAGGAGTTAATTATGGAACCATCAGTAAAATGGGCTGGGAATCCTAACATTATAGTTGCAATCAAAGCATTCGGGTTGCGAGCCACAGTTCAGGTTGTTGATCTGCAAGTATTTGCCTCTCCACGAATCACATTGAAGCCTTTAGTCCCGAGTTTTCCTTGCTTTGCGAATATTTATGTGTCACTCATGGAGAAGCCACATGTTGACTTTGGATTAAAACTGCTTGGAGCTGATGTAATGTCTATTCCTGGTGTTTATAGGCTTGTCCAGGAAATCATCAAAGAACAGGTAGCAAAAATGTACTTATGGCCTAAGGCCCTTGAGGTGCAAATAATGGATCCAACAAAGGCCATGAAAGTACCTGTAGGAATCCTCCATGTGAAGGTTCTTAGAGCAACAAATCTCAAGAAGAAAGATCTACTCGGAGGATCAGACCCGTACGTGAAGCTTAAACTCTCTGACGACAAACTTCCTTCAAAGAAAACTAGCGTGAAATATAAGAAATTGAATCCAGAATGGAATGAGGAATTCAATATGGTTGTCAAAGATCCGGAATCTCAATTCTTGGAACTTAGTGTTTATGATTGGGAGCAGATTGGGAAGCATGACAAGATGGGAATGAATGTGATTCAATTGAAAGAGCTTACAGCGGACGAAGCGAAAGAGCTGACTCTTGATTTACACAAGACTATGGAGCCTAATGATCCAGAAAATGAGAAGTCAAGGGGAGAGATCACAGTACAAGTTCTGTATAAGCCTTTTAAAGATGATGAGTTGGCTCAGAATTCAGAGGACCCTAATGCAATAGAAAAGGCTCCTGAAGGAACACCTGCCACTGGTGGTTTGCTTGTTATTATCATCCATGAAGCTGAAGATGTTGAAGGGAAACACCACACAAATCCATATGCAAGACTCATTTTCAAAGGAGAGGAGAGGAAAACCAAGCATGTGAAGAAAAATAGAGATCCAAGATGGAATGAAACATTTCAATTTACACTGGAGGAACCTCCCACCAATGAGAGGCTATATGTTGAAGTGCTTAGTGCCTCCTCTAAACTAGGCCTGCTTCATCCCAAGGAAACCTTGGGTTATGTGGATATAAATCTATCTGATGCTGTTAGCAACAAAAGAATCAACGAGAAATATCATCTCATTGACTCAAGAAATGGAAAGATTCAAATTGAGCTTCAGTGGAGAACTCCTTGA 1230 0.4049 MKVYNTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADVMSIPGVYRLVQEIIKEQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVLRATNLKKKDLLGGSDPYVKLKLSDDKLPSKKTSVKYKKLNPEWNEEFNMVVKDPESQFLELSVYDWEQIGKHDKMGMNVIQLKELTADEAKELTLDLHKTMEPNDPENEKSRGEITVQVLYKPFKDDELAQNSEDPNAIEKAPEGTPATGGLLVIIIHEAEDVEGKHHTNPYARLIFKGEERKTKHVKKNRDPRWNETFQFTLEEPPTNERLYVEVLSASSKLGLLHPKETLGYVDINLSDAVSNKRINEKYHLIDSRNGKIQIELQWRTP* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0860 409 CDD C2 133 235 - -
Amo06g0860 409 ProSiteProfiles C2 domain profile. 111 233 IPR000008 -
Amo06g0860 409 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 3 117 IPR039010 -
Amo06g0860 409 Gene3D C2 domain 290 408 IPR035892 -
Amo06g0860 409 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 408 IPR045050 GO:0008289
Amo06g0860 409 SMART C2_3c 290 389 IPR000008 -
Amo06g0860 409 SMART C2_3c 132 232 IPR000008 -
Amo06g0860 409 PRINTS C2 domain signature 197 205 IPR000008 -
Amo06g0860 409 PRINTS C2 domain signature 175 188 IPR000008 -
Amo06g0860 409 PRINTS C2 domain signature 148 160 IPR000008 -
Amo06g0860 409 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 120 IPR031468 GO:0008289
Amo06g0860 409 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 407 IPR035892 -
Amo06g0860 409 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 126 263 IPR035892 -
Amo06g0860 409 Gene3D C2 domain 128 283 IPR035892 -
Amo06g0860 409 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 408 - -
Amo06g0860 409 Pfam C2 domain 131 233 IPR000008 -
Amo06g0860 409 Pfam C2 domain 290 392 IPR000008 -
Amo06g0860 409 ProSiteProfiles C2 domain profile. 273 390 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0860 Amo-Chr6 11840341 11842134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0860 129 388 Lipid Metabolism Gene Families AT3G61300 28.364 8.08e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0860 - - aip:107645319 811.216