Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0845 ATGGCCAAATTTATTCTTGTTTTGGCCACCTTCATTTTCACAGTGATGAATACTGCATATGCTTTCTCAGCTTCCGGTTGGACCAATGCCCATGCCACCTTCTATGGCGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATGCAGCAGGGTATGGGACGAGAACTGCGGCTTTGAGCACAGCCTTGTTCAATGATGGAGCCTCATGCGGAGAATGCTACAAGATCATCTGRGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGKTCTTCCCAATAACAATGGAGGGTGGTGCAACCCACCTCTGAAGCACTTTGATATGGCACAACCAGCATGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTCCCCGTCCTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTAAGATTCAGCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAAGTGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATGCATATTTGAATGGCCAATCTTTGTCATTCAGGGTCACTACTACTGATGGAGAAACTAAGCTTTTCAATGACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTWTTCAGTTCTCATAA 765 0.4614 MAKFILVLATFIFTVMNTAYAFSASGWTNAHATFYGGSDASGTMGGACGYGNLYAAGYGTRTAALSTALFNDGASCGECYKIIXDYKADSRWCIKGRSVTITATNFCPPNFXLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSINGRDYFELVLISNVGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGETKLFNDIVPSNWGFGQTFSSPXQFS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0845 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Amo06g0845 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Amo06g0845 254 PANTHER EXPANSIN 2 253 - -
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Amo06g0845 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Amo06g0845 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Amo06g0845 254 Gene3D - 160 254 IPR036749 -
Amo06g0845 254 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Amo06g0845 254 SMART dpbb_1 62 150 IPR007112 -
Amo06g0845 254 Gene3D - 13 156 IPR036908 -
Amo06g0845 254 PANTHER EXPANSIN-A15 2 253 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Amo06g0845 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Amo06g0845 254 Pfam Lytic transglycolase 62 149 IPR009009 -
Amo06g0845 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0845 Amo-Chr6 11733992 11735469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0845 62 253 Expansin Gene Family AT1G20190 81.771 2.66e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0845 - - gmx:548040 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0845 06 11733992 11735469 Amo08g0220 08 3625152 3627114 PCT
Amo08g0220 08 3625152 3627114 Amo06g0845 06 11733992 11735469 PCT