Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0843 ATGCTGGACTCAGTTCTGCTGGCGCTGTTCCTGCCGTGCCTGGGCATGAGCGCCGTCTTCATAGTGTACATCTGCCTTCTCTGGTACGCCACCGCACACCATCCCAACCTCCCTCCGCCCCCAGCCAAAACCCTCTCCGTGAAGGGCCTCTCCCCCTCCGACCTTGACAAGCTCCCCAAGGTTACCGGCAAGGACCTGCTGTCCCCTAGCGAATGTGCAGTGTGCCTCGATGACATCGCCCACGAACAAGCTGTTCGGATGGTTCCCGGTTGCAACCATGGCTTTCACCTTGAATGCGCGGATACCTGGCTCTCAGAACACCCTCTGTGTCCGGTTTGTAGAGCCAAACTTGACCTTGAGAATTTGAATTCCTCTGAAAGTGAAAAGAATCCATGCTAA 399 0.5614 MLDSVLLALFLPCLGMSAVFIVYICLLWYATAHHPNLPPPPAKTLSVKGLSPSDLDKLPKVTGKDLLSPSECAVCLDDIAHEQAVRMVPGCNHGFHLECADTWLSEHPLCPVCRAKLDLENLNSSESEKNPC* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0843 132 Pfam Ring finger domain 71 114 IPR001841 -
Amo06g0843 132 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Amo06g0843 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Amo06g0843 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 132 - -
Amo06g0843 132 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 132 - -
Amo06g0843 132 SMART ring_2 72 113 IPR001841 -
Amo06g0843 132 SUPERFAMILY RING/U-box 63 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0843 Amo-Chr6 11710991 11712319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0843 1 132 C3H Transcription Factor Family AT5G42200 48.905 1.43e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0843 K19037 - gmx:100817919 202.601