Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0831 ATGGCGGCGACAACAACCGAAAACGTATTGAAAGAAACGGTGCAGCGATATGAAGAAGACGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACAGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCGCAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACGCAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCTTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGATCTTCTGTTATCATATGGATATGAAAATGATGATAAAATCTTTTACGCCTCATTTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTCATCCCAAAAAATGTTCAGCAGTTCTGGATCTCGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAAAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTCCATATTATTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCYAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTGTTGAAACATGACAAAGTTTTAAGCAAGAATGCACCTCCTTCGCACCTGCGTGATGTGCCCAACTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAATCGTCGCAAGGGATTCAAGAAAAAACCAAAAACAGGTGGAGACCCTCTGAAGGCTATCTCTGCTGCGGTATCAAAAAGATCGCACAAAGGTGGAAGCCACAACAATACCGGTGGTAGACATAAGCACAAAAAGACTGACTGA 1689 0.4233 MAATTTENVLKETVQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDRKKQAPNAFVLVPTRELCQQVYAEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEIFCYHMDMKMMIKSFTPHLPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWISCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHIIEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPXSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNNRRKGFKKKPKTGGDPLKAISAAVSKRSHKGGSHNNTGGRHKHKKTD* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0831 562 Pfam Helicase conserved C-terminal domain 263 404 IPR001650 -
Amo06g0831 562 MobiDBLite consensus disorder prediction 548 562 - -
Amo06g0831 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 235 IPR014001 -
Amo06g0831 562 Pfam DEAD/DEAH box helicase 49 224 IPR011545 GO:0003676|GO:0005524
Amo06g0831 562 MobiDBLite consensus disorder prediction 506 562 - -
Amo06g0831 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 416 IPR027417 -
Amo06g0831 562 SMART helicmild6 292 404 IPR001650 -
Amo06g0831 562 PANTHER RNA HELICASE 21 515 - -
Amo06g0831 562 SMART ultradead3 44 255 IPR014001 -
Amo06g0831 562 CDD SF2_C_DEAD 252 413 - -
Amo06g0831 562 Gene3D - 2 237 IPR027417 -
Amo06g0831 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Amo06g0831 562 CDD DEADc_DDX56 32 237 - -
Amo06g0831 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 450 IPR001650 -
Amo06g0831 562 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 21 515 - -
Amo06g0831 562 Gene3D - 240 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0831 Amo-Chr6 11630728 11637476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0831 26 427 Eukaryotic Initiation Factors Gene Family AT3G19760 25.806 1.42e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0831 K14810 - gmx:100800749 832.402