Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0825 ATGAGCTGCTTCTCTTGCCTTGTTGATGATGATCACCACGGGAAGCATGGGCCCGGAGAGATGAACAGAATGGAATTATTAATTGAGAACTACTTCAAGAAGAATAATGCAGGGAGAGGGCGGAAGAAGAAGAAGCAGGATCGGGGTGAAAGCAAGACAGACGCTGCCATCAGCTTTGGTTTTCGGGAGCTTGAATGGGCAACCGACACTTTCAAGGAAGCCAACTTGATTGGGGAAGGCGGTTTTGGAAGGGTCTACAAGGGTCGTCTCTTGACAGGCCAGGCATGCATCCATGTGGTTGCTGTAAAACAATTAAATCATGACGGGCATCAAGGTTTTCAAGAATTTGTGACGGAGGTGCTTATGCTTAGCCTCCTCCACCATTCTAATCTCGTTAACTTGATTGGCTATTGCACCGATGGTGAGCAGAGGCTGTTGGTGTATGAATATATGCCCATGGGTAGCCTTGAAGATCATCTTTTTGCAGCGGATCCTACATTGAATAATAAGGAAGGAGGGCTAAGTTGGATAACTCGAATGAAGATCGCGGCCGGGGCTGCTCGTGGGCTGGAGTATCTCCATTGCAAAGCAAATCCACCTGTTATCTATCGCGACTTGAAATCGGCGAATATCTTATTAGACAATGATTTCAACCCAAAACTCTCAGATTTTGGGCTCGCCAAGCTAGGGCCTGTTGGAGACAACACCCATGTTTCCACCAGAGTCATGGGAACGTACGGCTACTGCGCCCCCGAATATGCCATGAGTGGAAAATTAACTCTTAAATCCGATATTTACAGCTTTGGTGTTGTCTTGCTCGAGTTGATCACTGGTCGTAAGGCCATGGATTTCACTAGAAAACAAGGCAGCCAAAACTTAGTTTCATGGGCTCGTGCTTTCTTAAGTGACAGGAAAAAGTTTAGGCAAATGGTTGACCCTCGATTGCGGGGAAGCTATCCTGTGCGTTGCATGCATCATGCGATTTGTATAACCGCAATGTGTCTCCAGGACCAACCAATTTTCCGTCCACATGTTCGTGATATTGTTGCTGCACTAGATTACATAGTTTCTCAGAGTATTCTTGAACTCGATAAGCATGGAAGACTGTCTGACATCAACTCATCACAACAAGAACCACAACCGCAAATTGCCACAAGTTAA 1161 0.4608 MSCFSCLVDDDHHGKHGPGEMNRMELLIENYFKKNNAGRGRKKKKQDRGESKTDAAISFGFRELEWATDTFKEANLIGEGGFGRVYKGRLLTGQACIHVVAVKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVNLIGYCTDGEQRLLVYEYMPMGSLEDHLFAADPTLNNKEGGLSWITRMKIAAGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDFTRKQGSQNLVSWARAFLSDRKKFRQMVDPRLRGSYPVRCMHHAICITAMCLQDQPIFRPHVRDIVAALDYIVSQSILELDKHGRLSDINSSQQEPQPQIATS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0825 386 Pfam Protein tyrosine and serine/threonine kinase 75 352 IPR001245 GO:0004672|GO:0006468
Amo06g0825 386 CDD STKc_IRAK 77 353 - -
Amo06g0825 386 PANTHER OS07G0668900 PROTEIN 40 360 - -
Amo06g0825 386 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Amo06g0825 386 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Amo06g0825 386 ProSitePatterns Protein kinases ATP-binding region signature. 77 103 IPR017441 GO:0005524
Amo06g0825 386 Gene3D Transferase(Phosphotransferase) domain 1 151 374 - -
Amo06g0825 386 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0825 386 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0825 386 PANTHER OS07G0668900 PROTEIN 40 360 - -
Amo06g0825 386 PIRSF ILK 28 368 - -
Amo06g0825 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0825 Amo-Chr6 11573413 11574831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0825 1 355 Glycoside Hydrolase AT3G07070 53.495 9.65e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo06g0825 PK_Tyr_Ser-Thr 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0825 - - ahf:112805431 713.761