Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0800 ATGGCGTCGCTGTTCGGTTCGTCGTCGGGCTCCACATCGATGGTGGTGACGAACACGCCGTCGCAGGACCTTGCCCTCACCAACCTCGCCTTCTGTTCCTCCTCCGATCTCCGCAACTTCGCCGTCCCCAATCGCTCCAACCTCTTCCTCGCCTTCGTTGGCGACTCCTTCAACATTCGCAGTGGCCAGATTGCTCTCAATTCCATTCAACGTCGCTGTGTTAAAGTCTCCGCTGCTGAATCCATTCCTGTCACCAGATTTGTGCCACCTGAAAACTTCGACCTGGCATTGTTAACCCTTGAACTGGAATTCATTAAAAAAGGAGCAAAGAGTGAACAGATTGATGCTCCCCAACTGTCTAAGCAACTTCGGAAAAGGTTCGCAAACCAGGTTATGACAGTAGGGCAAAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTCACAGTTACACAAGCTGCTGTTGAGGGTCAAGAAAAGACTAATGCTCTTGAAAGAGGGATGATCTCAGATGACACATATGTTGTTTTTGAAACAGCACGTGATAGTGGAATCAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTTTTCCCTCCCCACGTGACATCGAAATTAGGGATCAAGCATGTGAAGGGCATGTTGCTTTATGGCCCKCCTGGAACTGGAAAGACTCTTATGGCCCGGCAAATTGGGAAAATTCTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATRGATGCTATTTGTAAGTCAAGAGGTTCAACTCGCGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAGGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTCCCGATGTGAATCTTCAAGAGCTCGCTGCTAGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCACGAAGCAAGTTGAGGAAGAGAATATTAAGGTTACCATGGATGACTTTTTGAATGCACTCCAAGAGGTTATTCCTGCATTTGGGGCTTCCACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTTGACTGTGGTGACCGACATAAGCACATCTATCAAAGAGCAATGCTACTAGTGGAGCAAGTAAAAGTAAGCAGAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAGACCGCACTTGCAGCTACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATTGTTTCAGCTGAAACAATGATTGGACTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTGCCATTGGTCCCCGGTTTTCAAACTTGATTTCTCAGACACTATTGGTCCTACTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACAACAAGCGAATTGACTTTCTTGGACTCAATTGGATTTTGTGATACTTTTTCTGTCACTTACCATGTTCCTACCTTGAGCACAAATGATGCCAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTCATGAAGATATTGATGCTGCTGCAGAGGCAATGAATGATATGCCTATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGGCTCAAGGTGGATCTGCAGAAGCTATCTATTCTGGCAAAGAGAAGATCAGTATCTCTCATTTCTATGATTGCCTCCGGGATGTTGTCAGAATATAA 2136 0.4377 MASLFGSSSGSTSMVVTNTPSQDLALTNLAFCSSSDLRNFAVPNRSNLFLAFVGDSFNIRSGQIALNSIQRRCVKVSAAESIPVTRFVPPENFDLALLTLELEFIKKGAKSEQIDAPQLSKQLRKRFANQVMTVGQKVLFEYHGNNYSFTVTQAAVEGQEKTNALERGMISDDTYVVFETARDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEXDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKQVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELTFLDSIGFCDTFSVTYHVPTLSTNDAKKVLEQLNVFAHEDIDAAAEAMNDMPIRKLYMLIEMAAQGAQGGSAEAIYSGKEKISISHFYDCLRDVVRI* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0800 711 CDD AAA 246 389 - -
Amo06g0800 711 SUPERFAMILY Cdc48 domain 2-like 90 193 IPR029067 -
Amo06g0800 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 487 IPR027417 -
Amo06g0800 711 Gene3D - 197 389 IPR027417 -
Amo06g0800 711 Gene3D - 390 477 - -
Amo06g0800 711 Gene3D - 91 188 - -
Amo06g0800 711 PANTHER BNAA03G50350D PROTEIN 577 710 - -
Amo06g0800 711 PANTHER BNAA03G50350D PROTEIN 9 577 - -
Amo06g0800 711 Gene3D - 9 87 - -
Amo06g0800 711 PANTHER VESICULAR-FUSION PROTEIN NSF 577 710 IPR039812 GO:0016887|GO:0035494
Amo06g0800 711 PANTHER VESICULAR-FUSION PROTEIN NSF 9 577 IPR039812 GO:0016887|GO:0035494
Amo06g0800 711 Gene3D - 486 579 IPR027417 -
Amo06g0800 711 SMART AAA_5 524 650 IPR003593 -
Amo06g0800 711 SMART AAA_5 244 391 IPR003593 -
Amo06g0800 711 ProSitePatterns AAA-protein family signature. 359 377 IPR003960 GO:0005524|GO:0016887
Amo06g0800 711 Pfam AAA+ lid domain 415 470 IPR041569 -
Amo06g0800 711 Pfam ATPase family associated with various cellular activities (AAA) 248 388 IPR003959 GO:0005524|GO:0016887
Amo06g0800 711 SUPERFAMILY ADC-like 12 90 IPR009010 -
Amo06g0800 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 681 IPR027417 -
Amo06g0800 711 Pfam Cell division protein 48 (CDC48), domain 2 113 158 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0800 Amo-Chr6 11146060 11153218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0800 239 455 Calmodulin-binding Proteins AT3G56690 39.367 4.28e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0800 K06027 - gmx:100779259 1216.45