Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0798 ATGGGTGAAAATGATAGTAGTAATGTGTTAGACCTCAACCTTGGCGTAGGGAATGGTGGTGGCCAAGTAGGGCAGTCGCTGAGGCCACGGTGTCCGGCACCTTTTCTTTTGAAGACTTATGATTTGTTGGAAGAAAGCGGCAACGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTATTGTATGGTCTCCGGCTGAATTCTCTGAGCTCACCTTGCCTAGATATTTCAAGCACAATAACTTCTCAAGCTTCATTCGCCAATTGAATACATATGGATTCAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGGTGTAGGGATATGCTAGTTGAGATCACAAGGAAAAAGTGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCTTCTTCAGAGGAAAATGCAATCACTTCTAATAATTCAATGGAAGAAAGCAACAATAATAGCCATCAACTACTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGGTTGGAGCTGCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTCGGGGACAATGTTAG 630 0.419 MGENDSSNVLDLNLGVGNGGGQVGQSLRPRCPAPFLLKTYDLLEESGNGGKIVSWNGDGSGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKCEPSVFPSYLKSSSEENAITSNNSMEESNNNSHQLLMEENKNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRGQC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0798 209 Coils Coil 159 186 - -
Amo06g0798 209 SMART hsfneu3 31 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g0798 209 SUPERFAMILY "Winged helix" DNA-binding domain 32 125 IPR036390 -
Amo06g0798 209 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g0798 209 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g0798 209 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g0798 209 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 25 205 - -
Amo06g0798 209 Gene3D - 29 126 IPR036388 -
Amo06g0798 209 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 205 IPR027725 -
Amo06g0798 209 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo06g0798 209 Pfam HSF-type DNA-binding 35 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0798 Amo-Chr6 11130455 11133288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0798 31 186 HSF AT5G62020 40.331 2.88e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo06g0798 HSF_DNA-bind 2.4e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0798 K09419 - gmx:100789792 297.745