Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0778 ATGGCCTCATCGAGTGGAAACTCGTCTACATCCACCAAATTTTGTGGCTCTGAAGAAGATTTGCAACTTCTGATGGATCAAAAGAAGAGGAAGAGAAAGCAGTCGAACCGCGAATCGGCGAGGAGATCTAGAATGAGGAAGCAAAAGCACTTGGATGACCTAGTTGCTGAAGTTGAGAAGCTTAAAAAGGAGAACAATGAAATCCTTACCGGAGTTAAGATCACAACACAAAAGTTTCTGAATATTGAGGGAGAAAATTCCATCTTAAGGGTCCAAATGAGTGAACTTACCAATAGGCTTGAATCACTCAATCATATGCTTAGCTTCTTCAACAACAATAACAACACCATCACAAGCACTAGTCCAATTTTTGATAGTGAATTCTACCATGATTATAATTTCATGAATCATCATCACATTAACATGTGCCTTAACCAACCCATCATGGCATCTTCAAATCACATGTTTGAGTGGTGA 477 0.392 MASSSGNSSTSTKFCGSEEDLQLLMDQKKRKRKQSNRESARRSRMRKQKHLDDLVAEVEKLKKENNEILTGVKITTQKFLNIEGENSILRVQMSELTNRLESLNHMLSFFNNNNNTITSTSPIFDSEFYHDYNFMNHHHINMCLNQPIMASSNHMFEW* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0778 158 Gene3D - 26 79 - -
Amo06g0778 158 PANTHER BZIP TRANSCRIPTION FACTOR 1 154 - -
Amo06g0778 158 Coils Coil 44 71 - -
Amo06g0778 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 26 89 IPR004827 GO:0003700|GO:0006355
Amo06g0778 158 CDD bZIP_plant_GBF1 29 79 IPR045314 GO:0003700|GO:0006355
Amo06g0778 158 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 154 - -
Amo06g0778 158 SUPERFAMILY Leucine zipper domain 28 80 IPR046347 GO:0003700|GO:0006355
Amo06g0778 158 SMART brlzneu 24 88 IPR004827 GO:0003700|GO:0006355
Amo06g0778 158 MobiDBLite consensus disorder prediction 1 51 - -
Amo06g0778 158 Coils Coil 86 113 - -
Amo06g0778 158 Pfam bZIP transcription factor 28 68 IPR004827 GO:0003700|GO:0006355
Amo06g0778 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 31 46 IPR004827 GO:0003700|GO:0006355
Amo06g0778 158 Coils Coil 18 38 - -
Amo06g0778 158 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0778 Amo-Chr6 10990780 10992038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0778 24 156 bZIP Transcription Factor Family AT4G34590 50.725 1.79e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo06g0778 bZIP_1 7.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0778 K25786 - cit:102624589 161.384