Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0755 ATGCTCATATCTCATATGGCATTGAACCACAACCACACTCACTTTGAAGAGTATCAACATCATCACACACCACAACCTTCATCAGATTCTTCTCTACTCATATTTGTTATTGTCCTGCCTCTCATACCGGCCACACTTTTCATACTCATTACCTACTTATCTTTTGTTACAAAATGCTGCTCAAATTGGCACCATGTTAACCCTCTAAGATGGATCTCCTTCCTGCGGATGCAGAATCCCAATAATCCGCATCCACAGGATGAAGATCCCTTCATAGGATTCTCTCCAAGGATGCTCAACCTTGGCTTAGATGAATCTTCCATCCAAGAAATCCCAACATTTCAGTTTACAAAAGATTTTCAAAGCATCTCTGCCTGTGTGGTTTGTCTGACAGAGTTTCAAGAAAGGGAAATGCTCAAAGTTCTTCCAAATTGCAACCATGCATTTCACTTCGATTGCATTCATATTTGGCTTCAAACCAATGCAAATTGCCCTCTCTGCAGAACAAGTATCTCCGGCAACATGCAGCTTCCAACTGACCGTATCATAGCCCCGAGTTCTTCCCCTCAGGACTCTCAGTTGCTCTCTAACATGGCAAGTGATGAAGATTTTGTGGTCATTGAAGTTGGAGCAGAACATGAAGGAATTACAACACTGCCACAGATGCAGCAACAAGTGATGAATAATGACTCAGGGGAAAGCATAGCACACAGTAGGAGTTACTCTAGCTTTGCAAGGAAGAAACCATGGAAGTGCCACCATGTTTCAATCATGGGAGATGAGTGCATTGATGTTGGAAAGAAAGATGATCAATTCTCTTCTCTTCAGCCTATTAGAAGATCCTTTTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATTATTCAGCAAAATAGGCATAATCAGAATCATGCTAGTGCCAGTGAAGATTGTAATAGCAGAACCAGAAGATCATTCTTTCCGTTCCGTTATTGCCGTGGATCCAAAAGTGCAATCATTCCTCTGGAAAATGAGGTTTAA 1035 0.4126 MLISHMALNHNHTHFEEYQHHHTPQPSSDSSLLIFVIVLPLIPATLFILITYLSFVTKCCSNWHHVNPLRWISFLRMQNPNNPHPQDEDPFIGFSPRMLNLGLDESSIQEIPTFQFTKDFQSISACVVCLTEFQEREMLKVLPNCNHAFHFDCIHIWLQTNANCPLCRTSISGNMQLPTDRIIAPSSSPQDSQLLSNMASDEDFVVIEVGAEHEGITTLPQMQQQVMNNDSGESIAHSRSYSSFARKKPWKCHHVSIMGDECIDVGKKDDQFSSLQPIRRSFSMDSANDRQVYLDVQAIIQQNRHNQNHASASEDCNSRTRRSFFPFRYCRGSKSAIIPLENEV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0755 344 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Amo06g0755 344 Pfam Ring finger domain 125 168 IPR001841 -
Amo06g0755 344 SMART ring_2 126 167 IPR001841 -
Amo06g0755 344 PANTHER RING-H2 FINGER PROTEIN ATL16 13 341 IPR044600 GO:0016567|GO:0016740
Amo06g0755 344 CDD RING-H2_PA-TM-RING 126 168 - -
Amo06g0755 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 173 IPR013083 -
Amo06g0755 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 341 - -
Amo06g0755 344 SUPERFAMILY RING/U-box 125 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0755 Amo-Chr6 10652627 10653661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0755 27 305 C3H Transcription Factor Family AT1G04360 41.613 1.58e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0755 K19041 - gmx:100809883 398.667