Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0749 ATGACAGGTTCAGGTACACCTTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGCGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCCAAGCTCCTTGCTCATCTTCCTGTCGACCATCGCTGCGAAGCCGCCCTCACCATCTCATTCGAAGCTCAGGCAAGGCTTCAAGATCCAATCTATGGCTGCGTCGCACATATTTTTGCCCTACAACAACAGGTTATGAATTTACAAGCACAGTTGGCTTATTTAAGGGAACAAGCTGCACAGAGTTGTAATCTGAACCCTAATACTACTACTGCTCTTTACCCCCATCACCAAGATCTTGGAAATTCGTTCCAGATGGAGAATTCCACCATGGTTCCACACTTTCTTTCTAATAGTTCATCTAATTATCCCTCATCAGCAACACAACAATACCATGGGAATACTCGTAGTAGTCTCATGATGGAATCAAACCCTATTGAGAACTACGAAAATTCAAGCATCTCCTTTAATTCATATAGCTTTGATGAGACTTGTGACACGCTGTTCTTTGACATGAAAAGTGGATCAACTTCAATAAGTGGTCTTTGA 636 0.4277 MTGSGTPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVDHRCEAALTISFEAQARLQDPIYGCVAHIFALQQQVMNLQAQLAYLREQAAQSCNLNPNTTTALYPHHQDLGNSFQMENSTMVPHFLSNSSSNYPSSATQQYHGNTRSSLMMESNPIENYENSSISFNSYSFDETCDTLFFDMKSGSTSISGL* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0749 211 Coils Coil 87 107 - -
Amo06g0749 211 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Amo06g0749 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 185 - -
Amo06g0749 211 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Amo06g0749 211 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0749 Amo-Chr6 10583666 10584525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0749 7 192 AS2 family AT3G58190 55.612 7.00e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo06g0749 LOB 6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0749 K13945 K13944 gmx:100816960 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0749 06 10583666 10584525 Amo12g0707 12 14384158 14386870 PCT
Amo12g0707 12 14384158 14386870 Amo06g0749 06 10583666 10584525 PCT